Factsheet for PGSC0003DMT400001105

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22890.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT5G22890.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT5G22890.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT5G22890.1	PGSC0003DMT400069515	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066420.1.1	Tomato	nucleus, plastid	94.34	78.12
GSMUA_Achr1P15330_001	Banana	cytosol	42.45	48.04
VIT_06s0061g00780.t01	Wine grape	nucleus	55.03	44.87
GSMUA_Achr11P...	Banana	nucleus	46.23	43.24
CDY09179	Canola	nucleus	43.71	42.9
KRH26538	Soybean	nucleus, plastid	52.83	40.98
CDY26966	Canola	nucleus	46.86	39.63
CDY26965	Canola	nucleus	45.6	39.62
CDY31715	Canola	nucleus	46.54	39.36
CDX98183	Canola	nucleus	46.54	39.36
CDX74505	Canola	nucleus	46.54	39.36
Bra002438.1-P	Field mustard	nucleus	46.54	39.36
CDY09178	Canola	nucleus	45.6	39.3
AT5G22890.1	Thale cress	nucleus	45.91	39.14
CDY69109	Canola	nucleus	45.6	38.98
Os08t0562300-01	Rice	nucleus	43.4	35.84
TraesCS1A01G060200.1	Wheat	nucleus	43.08	35.68
TraesCS1D01G061200.1	Wheat	nucleus	43.08	35.4
TraesCS1B01G078700.1	Wheat	nucleus	43.4	35.2
OQU80698	Sorghum	nucleus	45.6	34.12
Zm00001d031895_P001	Maize	nucleus	44.65	33.89
PGSC0003DMT400017556	Potato	nucleus	15.09	33.57
Os04t0165200-01	Rice	nucleus	38.99	33.42
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	15.72	32.68
PGSC0003DMT400008898	Potato	extracellular, nucleus	34.91	30.16
Bra020223.1-P	Field mustard	nucleus	27.99	29.97
Bra020224.1-P	Field mustard	nucleus	27.67	29.24
PGSC0003DMT400067092	Potato	nucleus	36.79	27.02
PGSC0003DMT400023881	Potato	nucleus	37.42	23.2
Bra002437.1-P	Field mustard	nucleus	16.67	21.29
PGSC0003DMT400077822	Potato	nucleus	20.13	20.13
PGSC0003DMT400018308	Potato	nucleus, plastid	19.5	19.02
PGSC0003DMT400035408	Potato	nucleus	19.18	17.58
PGSC0003DMT400079144	Potato	nucleus	20.44	13.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400001105	EnsemblPlantsGene:PGSC0003DMG400000419	EntrezGene:102578650	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41
PFscan:PS50157	PGSC:PGSC0003DMG400000419	RefSeq:XP_006349041.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000294CBDD	UniProt:M0ZHX7	MapMan:15.5.15	:	:

Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000419]

Coordinates

chr11:+:39248599..39249555

Molecular Weight (calculated)

36181.9 Da

IEP (calculated)

8.791

GRAVY (calculated)

-0.725

Length

318 amino acids

Sequence
(BLAST)

001: MFITPDSQTI IHPPPESISM IIANMGTLIQ EIITTSSSLM FSCQKIVLDS TSLNQNSSRY REPSQNGHGH GQGQVDHLLQ DYNWYEDNYN YNCNTHEDNK
101: NHVTNSSTII ASSTISHDNY GKDFGKRELL LSTSKGKVVT HEENNYDIIE LDASDLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKS SAALSNPMKR
201: INDSTSEGLL KSSSNTIKYS CPQEGCRWNK KHAKFQPLKS MVCVKNHYKR SHCPKMYVCK RCNKKNFSVL SDLRTHEKHC GDLKWQCSCG TTFSRKDKLM
301: GHVSLFVGHT PLIKESAR

Best Arabidopsis Sequence Match ( AT5G22890.1 )
(BLAST)

001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK

Arabidopsis Description

STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.