Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g062060.1.1 | Tomato | nucleus | 70.61 | 93.87 |
| PGSC0003DMT400017556 | Potato | nucleus | 34.29 | 83.22 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 66.57 | 69.16 |
| PGSC0003DMT400096573 | Potato | cytosol, mitochondrion, nucleus, peroxisome | 30.26 | 68.63 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 61.38 | 65.94 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 59.08 | 65.92 |
| PGSC0003DMT400077822 | Potato | nucleus | 56.77 | 61.95 |
| GSMUA_AchrUn_... | Banana | plastid | 57.35 | 60.86 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 52.45 | 60.67 |
| KRH10191 | Soybean | nucleus, plastid | 59.94 | 60.29 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 59.08 | 60.12 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 55.33 | 59.63 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 53.89 | 58.62 |
| KRH23146 | Soybean | nucleus, plastid | 58.5 | 58.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.06 | 57.56 |
| AT1G51220.1 | Thale cress | nucleus | 54.76 | 56.38 |
| KRH29701 | Soybean | nucleus | 55.33 | 56.3 |
| KRH24697 | Soybean | nucleus, plastid | 54.76 | 55.72 |
| CDY06390 | Canola | nucleus | 53.31 | 55.39 |
| Bra030450.1-P | Field mustard | nucleus | 54.18 | 55.29 |
| CDY29624 | Canola | nucleus | 53.89 | 55.0 |
| CDY35565 | Canola | nucleus | 53.31 | 54.57 |
| CDY25224 | Canola | nucleus | 53.03 | 54.44 |
| CDY22834 | Canola | nucleus, plastid | 52.74 | 54.14 |
| Bra018902.1-P | Field mustard | plastid | 52.45 | 54.01 |
| Bra023918.1-P | Field mustard | nucleus | 55.33 | 53.48 |
| CDY57920 | Canola | nucleus | 55.33 | 53.48 |
| CDY27556 | Canola | nucleus | 54.47 | 52.79 |
| Bra031239.1-P | Field mustard | nucleus | 54.47 | 52.65 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 55.33 | 52.17 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 55.04 | 51.62 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 54.76 | 51.35 |
| Zm00001d036812_P001 | Maize | nucleus | 56.48 | 50.39 |
| EER88644 | Sorghum | nucleus, plastid | 58.21 | 50.0 |
| PGSC0003DMT400018308 | Potato | nucleus, plastid | 46.69 | 49.69 |
| Zm00001d046774_P001 | Maize | nucleus | 56.2 | 48.99 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 58.79 | 45.84 |
| AT3G20880.1 | Thale cress | nucleus | 54.18 | 45.63 |
| PGSC0003DMT400079144 | Potato | nucleus | 40.35 | 29.35 |
| PGSC0003DMT400001105 | Potato | nucleus | 17.58 | 19.18 |
| PGSC0003DMT400008898 | Potato | extracellular, nucleus | 19.88 | 18.75 |
| PGSC0003DMT400067092 | Potato | nucleus | 22.48 | 18.01 |
| PGSC0003DMT400023881 | Potato | nucleus | 22.77 | 15.4 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035408 | EnsemblPlantsGene:PGSC0003DMG400013609 | EntrezGene:102589040 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFscan:PS50157 | PGSC:PGSC0003DMG400013609 | RefSeq:XP_006354269.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI00029682CE | UniProt:M1B285 | MapMan:15.5.15 | : | : |
Description
TRANSPARENT TESTA 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013609]
Coordinates
chr11:-:34509503..34513337
Molecular Weight (calculated)
39776.2 Da
IEP (calculated)
6.844
GRAVY (calculated)
-0.913
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDPYTNYFH GWFNNFNPIY HSSSSSTPPP PHPFSSYYNN NYILSSSTNF QYLQPPPSPP LKEPLPLLSL SPIHQHQDNY SSTMEVDHNN TNYYSKVNKD
101: HESFGDEENQ DDESVSVALQ LGLPNLSPHD VISRINSSTN KEEVQEEHEQ EVVTLANIGY SSTLHKGQYW IPTPAQILIG PTQFSCPLCF KTFNRYNNMQ
201: MHMWGHGSQY RKGPESLRGT QPTAMLRLPC FCCSPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCTCGS
301: DFKHKRSLKD HIKAFGNGHE AYGIDCLEEE DEPASEIEQD NDHDPSN
101: HESFGDEENQ DDESVSVALQ LGLPNLSPHD VISRINSSTN KEEVQEEHEQ EVVTLANIGY SSTLHKGQYW IPTPAQILIG PTQFSCPLCF KTFNRYNNMQ
201: MHMWGHGSQY RKGPESLRGT QPTAMLRLPC FCCSPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCTCGS
301: DFKHKRSLKD HIKAFGNGHE AYGIDCLEEE DEPASEIEQD NDHDPSN
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.