Factsheet for Bra018902.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22834	Canola	nucleus, plastid	98.52	98.22
CDY25224	Canola	nucleus	97.03	96.75
Bra030450.1-P	Field mustard	nucleus	88.43	87.65
AT1G51220.1	Thale cress	nucleus	85.16	85.16
Bra031239.1-P	Field mustard	nucleus	72.4	67.97
Bra023918.1-P	Field mustard	nucleus	71.22	66.85
Bra003295.1-P	Field mustard	nucleus	45.7	62.6
Solyc11g062060.1.1	Tomato	nucleus	47.18	60.92
GSMUA_Achr9P12600_001	Banana	nucleus	54.3	58.84
GSMUA_Achr3P03850_001	Banana	plastid	52.82	55.11
VIT_06s0004g01870.t01	Wine grape	nucleus	54.3	54.79
Bra007346.1-P	Field mustard	nucleus	49.55	54.4
GSMUA_Achr4P01560_001	Banana	nucleus	51.93	54.35
GSMUA_AchrUn_...	Banana	plastid	52.23	53.82
GSMUA_Achr6P03470_001	Banana	nucleus	50.74	53.6
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	47.48	53.33
KRH10191	Soybean	nucleus, plastid	53.71	52.46
PGSC0003DMT400035408	Potato	nucleus	54.01	52.45
Bra014612.1-P	Field mustard	nucleus, plastid	56.38	52.2
GSMUA_AchrUn_...	Banana	nucleus	52.52	51.45
KRH23146	Soybean	nucleus, plastid	52.23	50.29
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	50.45	49.85
KRH29701	Soybean	nucleus	49.85	49.27
KRH24697	Soybean	nucleus, plastid	49.85	49.27
Bra028067.1-P	Field mustard	nucleus	41.54	48.78
Bra019822.1-P	Field mustard	nucleus	42.73	46.75
TraesCS7A01G404400.1	Wheat	nucleus	50.74	46.47
TraesCS7D01G397800.1	Wheat	nucleus	50.74	46.22
TraesCS7B01G304000.1	Wheat	nucleus	50.45	45.95
Zm00001d036812_P001	Maize	nucleus	50.45	43.7
Zm00001d046774_P001	Maize	nucleus	51.04	43.22
EER88644	Sorghum	nucleus, plastid	51.63	43.07
Bra018638.1-P	Field mustard	nucleus	43.03	43.03
Bra031621.1-P	Field mustard	nucleus	40.65	40.65
Os06t0612300-01	Rice	endoplasmic reticulum, vacuole	52.52	39.78
Bra040971.1-P	Field mustard	nucleus	24.04	19.01
Bra002438.1-P	Field mustard	nucleus	20.77	18.62
Bra036750.1-P	Field mustard	nucleus	23.15	15.89
Bra020224.1-P	Field mustard	nucleus	11.57	12.96
Bra020223.1-P	Field mustard	nucleus	11.28	12.79
Bra002437.1-P	Field mustard	nucleus	5.93	8.03

Protein Annotations

EnsemblPlants:Bra018902.1	EnsemblPlants:Bra018902.1-P	EnsemblPlantsGene:Bra018902	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF61
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI000253E9FA	UniProt:M4DQV9
MapMan:15.5.15	:	:	:	:	:

Description

AT1G51220 (E=5e-160) | zinc finger (C2H2 type) protein (WIP5)

Coordinates

chrA06:+:1354392..1356400

Molecular Weight (calculated)

38513.5 Da

IEP (calculated)

6.579

GRAVY (calculated)

-0.878

Length

337 amino acids

Sequence
(BLAST)

001: MSNPAYSNLF NNGFDNTNFN CSTSLSYIYN SHNSFYYPNT TNPNYMAPTT STFPNSPPLR EALPLLSLSP IRHQEQQDQQ FMDTDQISSS KFLDYPHDVT
101: VDLHLGLPNY GVGGSYIAHV ATTDEQDDDQ GVEVTVDSHL HDDDDGDLHR DHHYWIPTPD QILMGPTQFS CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE
201: SLRGTQPTGM LRLPCYCCAP GCKNNIDHPR TKPLKDFRTL QTHYKRKHGS RPFACRRCGK AFAVKGDWRT HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF
301: GNDHIPCAID NFGGDHEDYY EAASDIQQQD DCNTNEC

Best Arabidopsis Sequence Match ( AT1G51220.1 )
(BLAST)

001: MSNPACSNLF NNGCDHNSFN YSTSLSYIYN SHGSYYYSNT TNPNYINHTH TTSTSPNSPP LREALPLLSL SPIRHQEQQD QHYFMDTHQI SSSNFLDDPL
101: VTVDLHLGLP NYGVGESIRS NIAPDATTDE QDQDHDRGVE VTVESHLDDD DDHHGDLHRG HHYWIPTPSQ ILIGPTQFTC PLCFKTFNRY NNMQMHMWGH
201: GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGSK PFACRMCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR
301: SLKDHVKAFG NGHVPCGIDS FGGDHEDYYD AASDIEQ

Arabidopsis Description

WIP5Zinc finger protein WIP5 [Source:UniProtKB/Swiss-Prot;Acc:Q8W031]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.