Factsheet for Bra028067.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12025	Canola	nucleus	98.26	98.26
CDY03134	Canola	nucleus	96.86	96.86
AT1G34790.1	Thale cress	nucleus	83.62	79.21
KRH18924	Soybean	nucleus	49.13	59.49
VIT_18s0001g05860.t01	Wine grape	nucleus	55.4	58.24
Solyc04g074320.1.1	Tomato	nucleus	55.05	57.88
KRH16750	Soybean	nucleus	49.48	57.03
Bra003295.1-P	Field mustard	nucleus	44.25	51.63
Bra007346.1-P	Field mustard	nucleus	47.74	44.63
Bra019822.1-P	Field mustard	nucleus	46.69	43.51
Bra018902.1-P	Field mustard	plastid	48.78	41.54
Bra030450.1-P	Field mustard	nucleus	49.13	41.47
Bra018638.1-P	Field mustard	nucleus	46.69	39.76
Bra014612.1-P	Field mustard	nucleus, plastid	49.48	39.01
Bra023918.1-P	Field mustard	nucleus	48.08	38.44
Bra031621.1-P	Field mustard	nucleus	44.95	38.28
Bra031239.1-P	Field mustard	nucleus	47.39	37.88
PGSC0003DMT400079144	Potato	nucleus	54.01	32.49
Bra002438.1-P	Field mustard	nucleus	23.34	17.82
Bra040971.1-P	Field mustard	nucleus	22.65	15.26
Bra036750.1-P	Field mustard	nucleus	22.65	13.24
Bra020224.1-P	Field mustard	nucleus	13.24	12.62
Bra020223.1-P	Field mustard	nucleus	12.2	11.78
Bra002437.1-P	Field mustard	nucleus	5.92	6.83

Protein Annotations

MapMan:15.5.15	EnsemblPlantsGene:Bra028067	EnsemblPlants:Bra028067.1	EnsemblPlants:Bra028067.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009813	InterPro:IPR013087	UniProt:M4EH02	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF69	SUPFAM:SSF57667	InterPro:TT1-like	UniParc:UPI0002542874
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

AT1G34790 (E=9e-111) TT1 | TT1 (transparent testa 1); transcription factor

Coordinates

chrA09:-:18709157..18710921

Molecular Weight (calculated)

32555.3 Da

IEP (calculated)

7.530

GRAVY (calculated)

-0.730

Length

287 amino acids

Sequence
(BLAST)

001: MDCEIYSSSS SENPRDHVQS LDLFPNITQN PNNNNTRIEP LPLIDRINLN SNLNLKPRPS YVGEGDDEVE DEEDVVVDVS LHIGLPGSGN SSNGKEIVTY
101: DAGKDIENEV SGKAYWIPTV DQIIIGFTHF SCHVCFKTFN RYNNLQMHMW GHGSQYRKGP ESLKGTQPRA MLGIPCYCCV EGCRNHIDHP RSKPLKDFRT
201: LQTHYKRKHG QKPYACRICG KLLAVKGDWR THEKNCGKRW VCVCGSDFKH KRSLKDHVKA FGPGHGSYPT DLFDEHCSYS SVSETHF

Best Arabidopsis Sequence Match ( AT1G34790.1 )
(BLAST)

001: MESPPLYEIS SSSSSEKPRH HFQSLDLFPN LNQNSCINNT LIEPLPLIDR INLNSNLDLN PNPLYAEEGE QEEEEEEEED REVDVDLHIG LPGFGKPSND
101: AKQLKKRNGK EIATYDAGKG IENELSGKAY WIPAPEQILI GFTHFSCHVC FKTFNRYNNL QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCRN
201: HIDHPRSKPL KDFRTLQTHY KRKHGHKPFS CRLCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGSGH GPYPTGLFEE QASNSSVSET
301: LFF

Arabidopsis Description

TT1Protein TRANSPARENT TESTA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWG3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.