Factsheet for Bra014612.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88959	Canola	nucleus	99.73	99.73
Bra003295.1-P	Field mustard	nucleus	59.07	87.4
Bra007346.1-P	Field mustard	nucleus	71.7	85.02
VIT_08s0007g08070.t01	Wine grape	nucleus	62.64	66.09
GSMUA_AchrUn_...	Banana	nucleus	54.4	60.55
KRH71956	Soybean	nucleus, plastid	60.16	59.03
Bra030450.1-P	Field mustard	nucleus	53.3	57.06
Bra018902.1-P	Field mustard	plastid	52.2	56.38
KRH33045	Soybean	nucleus, plastid	59.62	56.22
TraesCS7A01G404400.1	Wheat	nucleus	56.32	55.71
TraesCS7B01G304000.1	Wheat	nucleus	56.32	55.41
TraesCS7D01G397800.1	Wheat	nucleus	55.77	54.86
Bra023918.1-P	Field mustard	nucleus	53.57	54.32
Bra031239.1-P	Field mustard	nucleus	53.02	53.76
EER88644	Sorghum	nucleus, plastid	58.52	52.72
Zm00001d036812_P001	Maize	nucleus	56.32	52.7
GSMUA_Achr1P16530_001	Banana	nucleus	52.2	52.63
Zm00001d046774_P001	Maize	nucleus	56.87	52.01
Bra019822.1-P	Field mustard	nucleus	43.13	50.97
Bra028067.1-P	Field mustard	nucleus	39.01	49.48
Os06t0612300-01	Rice	endoplasmic reticulum, vacuole	56.59	46.29
Bra018638.1-P	Field mustard	nucleus	42.58	45.99
Bra031621.1-P	Field mustard	nucleus	37.91	40.95
Bra002438.1-P	Field mustard	nucleus	20.05	19.41
Bra040971.1-P	Field mustard	nucleus	20.88	17.84
Bra020224.1-P	Field mustard	nucleus	12.91	15.61
Bra020223.1-P	Field mustard	nucleus	12.64	15.49
Bra036750.1-P	Field mustard	nucleus	19.78	14.66
Bra002437.1-P	Field mustard	nucleus	6.59	9.64

Protein Annotations

EnsemblPlants:Bra014612.1	EnsemblPlants:Bra014612.1-P	EnsemblPlantsGene:Bra014612	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF98
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00025443B1
UniProt:M4DDP4	MapMan:15.5.15	:	:	:	:

Description

AT3G57670 (E=8e-148) NTT | NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA04:-:1749488..1751540

Molecular Weight (calculated)

41074.8 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.933

Length

364 amino acids

Sequence
(BLAST)

001: MADPYSNFFT GWFKPNPFHN YLNSSSNPSS PLPPPSSFFL IPHPGDLRRP PPTTPPSPPP REALPLLSLS PANKQQNHHD LIQEPPSTSM DVDYGHHHHQ
101: VDHNLDKDDH DVTVALSIGL PSPSTRDMAS LFMMSSSSSS SRTTNHHENI NDKKDPHNDY HHGSAGGGED DDEDSAGGCR ISRLNKYQYW IPTPSQILIG
201: PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT QPTGMLRLPC YCCSPGCRNN IDHPRAKPLK DFRTLQTHYN RKHGIKPFMC RKCGKAFAVR
301: GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGNGHG AYGIDGFDEE DEPASEVEQL DNDQ

Best Arabidopsis Sequence Match ( AT3G57670.1 )
(BLAST)

001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK

Arabidopsis Description

WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.