Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 70.67 | 80.33 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 72.73 | 77.74 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 65.1 | 71.38 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 66.57 | 70.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 69.79 | 69.19 |
| Solyc11g062060.1.1 | Tomato | nucleus | 51.91 | 67.82 |
| GSMUA_AchrUn_... | Banana | plastid | 62.76 | 65.44 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 61.0 | 64.6 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 61.0 | 62.28 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 61.0 | 61.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.65 | 61.16 |
| PGSC0003DMT400035408 | Potato | nucleus | 60.12 | 59.08 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 62.46 | 58.36 |
| GSMUA_Achr11P... | Banana | nucleus | 37.83 | 57.59 |
| KRH10191 | Soybean | nucleus, plastid | 56.89 | 56.23 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 50.73 | 55.81 |
| KRH23146 | Soybean | nucleus, plastid | 56.01 | 54.57 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 57.18 | 54.02 |
| KRH29701 | Soybean | nucleus | 53.96 | 53.96 |
| KRH24697 | Soybean | nucleus, plastid | 53.67 | 53.67 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 36.95 | 53.16 |
| CDY06390 | Canola | nucleus | 50.73 | 51.8 |
| AT1G51220.1 | Thale cress | nucleus | 51.03 | 51.63 |
| CDY35565 | Canola | nucleus | 51.03 | 51.33 |
| Bra030450.1-P | Field mustard | nucleus | 51.03 | 51.18 |
| CDY22834 | Canola | nucleus, plastid | 50.44 | 50.89 |
| CDY25224 | Canola | nucleus | 50.15 | 50.59 |
| CDY29624 | Canola | nucleus | 50.44 | 50.59 |
| Bra018902.1-P | Field mustard | plastid | 49.85 | 50.45 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 40.47 | 49.46 |
| Bra023918.1-P | Field mustard | nucleus | 51.61 | 49.03 |
| CDY57920 | Canola | nucleus | 51.61 | 49.03 |
| CDY27556 | Canola | nucleus | 50.73 | 48.32 |
| Bra031239.1-P | Field mustard | nucleus | 50.73 | 48.19 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 39.0 | 47.33 |
| AT3G20880.1 | Thale cress | nucleus | 51.61 | 42.72 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 41.06 | 32.48 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 18.77 | 22.78 |
| GSMUA_Achr11P... | Banana | nucleus | 19.65 | 19.71 |
| GSMUA_Achr10P... | Banana | nucleus | 22.87 | 19.6 |
| GSMUA_Achr10P... | Banana | nucleus | 18.77 | 18.23 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 20.82 | 18.07 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 21.11 | 17.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P11050_001 | EnsemblPlants:GSMUA_Achr3T11050_001 | EnsemblPlantsGene:GSMUA_Achr3G11050_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00029619F2 | UniProt:M0SDM2 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G11050_001]
Coordinates
chr3:+:8182430..8184482
Molecular Weight (calculated)
38071.9 Da
IEP (calculated)
7.483
GRAVY (calculated)
-0.731
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPFTNFFK VIQTHYLFSG NPSPPPVAIT SDLYHGHTNT YLPPQTPSPP LREALPLLRL SPSRHQGRED NNSCTAFGEG GKDKAMVTDG EVDADAVTVA
101: LHIGPPSPCA VDLISRISST SEDNIGRKEG EGSDDDDDDD DDDVVPLGYP SNPIGRINKG QYWIPTPSQI LLGPTQFSCP VCCKTFNRYN NMQMHMWGHG
201: SQYRKGPESL RGIQPTAMLR LPCYCCSPGC PNNIDHPRSK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS
301: LKDHIKSFGR GHAAYGINCL EEEEEPLSEI EQDGVQSHKG R
101: LHIGPPSPCA VDLISRISST SEDNIGRKEG EGSDDDDDDD DDDVVPLGYP SNPIGRINKG QYWIPTPSQI LLGPTQFSCP VCCKTFNRYN NMQMHMWGHG
201: SQYRKGPESL RGIQPTAMLR LPCYCCSPGC PNNIDHPRSK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS
301: LKDHIKSFGR GHAAYGINCL EEEEEPLSEI EQDGVQSHKG R
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.