Factsheet for GSMUA_Achr11P18950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P26210_001	Banana	nucleus	61.61	49.46
GSMUA_Achr6P21380_001	Banana	nucleus	51.79	48.95
GSMUA_Achr6P01410_001	Banana	nucleus	54.91	43.77
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	56.25	42.0
GSMUA_Achr9P12600_001	Banana	nucleus	57.14	41.16
GSMUA_Achr6P03470_001	Banana	nucleus	57.59	40.44
GSMUA_Achr4P01560_001	Banana	nucleus	58.04	40.37
GSMUA_Achr3P03850_001	Banana	plastid	58.04	40.25
GSMUA_AchrUn_...	Banana	nucleus	57.14	39.14
GSMUA_Achr3P11870_001	Banana	nucleus	58.04	38.24
GSMUA_AchrUn_...	Banana	plastid	55.8	38.23
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	57.59	37.83
GSMUA_AchrUn_...	Banana	nucleus	57.59	37.5
GSMUA_Achr1P16530_001	Banana	nucleus	59.38	36.84
GSMUA_Achr9P22340_001	Banana	nucleus	56.7	34.79
Os01t0859100-01	Rice	nucleus, plastid	57.59	34.31
TraesCS1D01G276200.1	Wheat	nucleus, plastid	55.8	34.06
TraesCS1B01G285900.1	Wheat	nucleus, plastid	56.25	34.05
TraesCS3D01G364800.1	Wheat	nucleus	55.36	33.79
TraesCS3B01G404000.1	Wheat	nucleus	55.36	33.33
GSMUA_Achr4P06350_001	Banana	nucleus	45.98	33.23
Os05t0444200-01	Rice	plastid	57.59	33.16
TraesCS1A01G276800.1	Wheat	nucleus, plastid	55.8	32.98
Zm00001d038297_P001	Maize	nucleus	56.25	32.14
EES03920	Sorghum	plastid	57.59	32.01
Zm00001d042781_P001	Maize	nucleus	57.59	31.93
EES18308	Sorghum	plastid	57.14	31.76
Zm00001d010131_P001	Maize	nucleus, plastid	55.8	31.73
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	56.25	29.23
TraesCS3A01G371700.1	Wheat	cytosol, plastid	55.36	29.04
GSMUA_Achr1P15330_001	Banana	cytosol	27.23	21.71
GSMUA_Achr11P...	Banana	nucleus	28.57	18.82
GSMUA_Achr10P...	Banana	nucleus	29.46	16.58
GSMUA_Achr5P01170_001	Banana	nucleus	28.12	16.03
GSMUA_Achr10P...	Banana	nucleus	24.55	15.67
GSMUA_Achr6P18840_001	Banana	nucleus	28.57	15.5

Protein Annotations

EnsemblPlants:GSMUA_Achr11P18950_001	EnsemblPlants:GSMUA_Achr11T18950_001	EnsemblPlantsGene:GSMUA_Achr11G18950_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF61	PFAM:PF12874
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000296C7B6
UniProt:M0RTH5	MapMan:15.5.15	:	:	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G18950_001]

Coordinates

chr11:+:20199924..20201625

Molecular Weight (calculated)

25091.7 Da

IEP (calculated)

9.726

GRAVY (calculated)

-0.671

Length

224 amino acids

Sequence
(BLAST)

001: MGLRDCPVDE SSFGFCFQSP PLCQWLKTPP SSSSSSASSS SSSSSSSSSS ESRYWIPTAA QILIGLEKFA CSVCNKTFNR YNNLQMHMWG HGPEYRKGPE
101: SLKGAQPMAM LKLPCYCCAR GCKNSIDHPR AKPLKDFRTL QTHYKRKHGI KSFACRKCSK PFAVRGDWRT HEKNCGKLWL CSCGSDFKHK RSLNDHVRSF
201: GNGHAACFTS RDASREADRV RSVE

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.