Factsheet for TraesCS3B01G404000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G364800.1	Wheat	nucleus	91.13	92.37
TraesCS3A01G371700.1	Wheat	cytosol, plastid	92.47	80.56
Os01t0859100-01	Rice	nucleus, plastid	72.58	71.81
TraesCS5B01G172600.1	Wheat	mitochondrion	23.92	64.96
EES03920	Sorghum	plastid	69.89	64.52
KRH25207	Soybean	nucleus	25.27	63.51
Zm00001d042781_P001	Maize	nucleus	66.94	61.63
GSMUA_Achr11P...	Banana	nucleus	33.33	55.36
GSMUA_Achr5P26210_001	Banana	nucleus	38.17	50.9
KRH22690	Soybean	nucleus	41.67	48.59
PGSC0003DMT400018308	Potato	nucleus, plastid	41.4	47.24
KRH26622	Soybean	nucleus	40.59	47.04
VIT_06s0080g00270.t01	Wine grape	plastid	43.01	46.11
KRH30442	Soybean	nucleus	40.32	45.45
TraesCS1B01G285900.1	Wheat	nucleus, plastid	43.55	43.78
Bra018638.1-P	Field mustard	nucleus	38.98	43.03
CDX95075	Canola	nucleus	38.98	42.9
CDX93575	Canola	nucleus	38.71	42.73
CDY22690	Canola	nucleus	37.9	41.84
AT1G08290.1	Thale cress	nucleus	37.63	41.54
CDY06308	Canola	nucleus	37.37	41.25
TraesCS5B01G177600.1	Wheat	nucleus, plastid	34.68	40.82
TraesCS7B01G304000.1	Wheat	nucleus	40.59	40.81
Bra031621.1-P	Field mustard	nucleus	36.83	40.65
Solyc06g074360.2.1	Tomato	nucleus	21.51	37.91
TraesCS5B01G262400.1	Wheat	nucleus	39.52	36.03
KRH25208	Soybean	nucleus, plastid	16.94	36.0
TraesCS7B01G147400.1	Wheat	nucleus	39.25	34.93
TraesCS1B01G078700.1	Wheat	nucleus	20.43	19.39
TraesCS5B01G519700.1	Wheat	nucleus	20.43	18.31
TraesCS6B01G227100.1	Wheat	nucleus	15.05	15.09
TraesCS3B01G414500.1	Wheat	nucleus	18.55	13.27

Protein Annotations

EnsemblPlants:TraesCS3B01G404000.1	EnsemblPlantsGene:TraesCS3B01G404000	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF57	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr3B:-:638356654..638358864

Molecular Weight (calculated)

40430.6 Da

IEP (calculated)

6.082

GRAVY (calculated)

-0.604

Length

372 amino acids

Sequence
(BLAST)

001: MGLRTCSSME GELLVASPFF EWLKPPGSPS SSRSSSTFSS SSSSMASGPH AEDGGAAQVD GSSVACLPLL RMLEEGKGAG GDHDHPAPGV KEEIMGSGAA
101: GVLGPGVDLN IGLPVGGSCD DDIMEEEGQE EDDDHDCDEE EEEEIDELKP EHGGCKVEAE EKDEHGEPMV SAGRSNSVSM PEFGMVGAEG GVPMGCEYWI
201: PTPAQILVGP VQFVCHVCNK SFNRYNNMQM HMWGHGREYR KGPESLKGTQ TLALLKLPCY CCAAGCRNSV AHPRARPLKD FRTLQTHYKR KHGARPFRCR
301: RCAKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGDHLP VALDGATAPA PAEDRRIIRF QR

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.