Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G242600.1 | Wheat | nucleus | 96.65 | 97.12 |
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 32.06 | 87.01 |
| TraesCS5B01G172600.1 | Wheat | mitochondrion | 23.45 | 71.53 |
| TraesCS5B01G262400.1 | Wheat | nucleus | 63.16 | 64.71 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 46.41 | 52.43 |
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 31.82 | 42.09 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 34.93 | 39.25 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 32.54 | 36.76 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 18.9 | 20.15 |
| TraesCS5B01G519700.1 | Wheat | nucleus | 19.62 | 19.76 |
| TraesCS6B01G227100.1 | Wheat | nucleus | 16.27 | 18.33 |
| TraesCS3B01G414500.1 | Wheat | nucleus | 18.18 | 14.62 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G147400.1 | EnsemblPlantsGene:TraesCS7B01G147400 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF68 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr7B:+:193308852..193311311
Molecular Weight (calculated)
45523.0 Da
IEP (calculated)
6.457
GRAVY (calculated)
-0.589
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPYTSFLK NPHYYYCTSS FPAPPPTPHL PPPFPPYAAL YPAVAAAATA APHHQYPSFF QHQPAQPAHH YSTAPPSPPL REALPLLSLS PTPAARPRAA
101: QQHDVADTDS DDDDNDCCYH LQQEVAAGSR TTSARTPLFA DLNCVPSCCD DGDGDPMDVE ASWSTSTDDA AVALRIGLPA AEADLLSGLS GRAAEEDEEE
201: EDDCKPGGGH EEVPLGFSST APIGRLNKGQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GVQPTAMLRL PCYCCAAGCR
301: NNIDHPRAKP LKDFRTLQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGKLWYCLC GSEFKHKRSL KDHARAFGHG HGAFGCNGAA GGDGGFDDDD
401: EGAVSEIEHD VVCGAAAR
101: QQHDVADTDS DDDDNDCCYH LQQEVAAGSR TTSARTPLFA DLNCVPSCCD DGDGDPMDVE ASWSTSTDDA AVALRIGLPA AEADLLSGLS GRAAEEDEEE
201: EDDCKPGGGH EEVPLGFSST APIGRLNKGQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GVQPTAMLRL PCYCCAAGCR
301: NNIDHPRAKP LKDFRTLQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGKLWYCLC GSEFKHKRSL KDHARAFGHG HGAFGCNGAA GGDGGFDDDD
401: EGAVSEIEHD VVCGAAAR
001: MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC LLLLFFSLSS LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
Arabidopsis Description
WIP4Zinc finger protein WIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W030]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.