Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G270700.1 | Wheat | nucleus | 95.83 | 95.37 |
| TraesCS5A01G263200.1 | Wheat | nucleus | 93.38 | 92.7 |
| TraesCS5B01G172600.1 | Wheat | mitochondrion | 24.75 | 73.72 |
| Zm00001d020923_P001 | Maize | nucleus | 70.1 | 65.15 |
| TraesCS7B01G147400.1 | Wheat | nucleus | 64.71 | 63.16 |
| EER96965 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 68.63 | 62.08 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 48.77 | 53.78 |
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 32.11 | 41.46 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 36.03 | 39.52 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 33.09 | 36.49 |
| TraesCS5B01G519700.1 | Wheat | nucleus | 20.1 | 19.76 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 18.38 | 19.13 |
| TraesCS6B01G227100.1 | Wheat | nucleus | 16.67 | 18.33 |
| TraesCS3B01G414500.1 | Wheat | nucleus | 19.12 | 15.0 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G262400.1 | EnsemblPlantsGene:TraesCS5B01G262400 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF68 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr5B:+:446992373..446996962
Molecular Weight (calculated)
44117.4 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.679
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MENPYTTFLK NYHQRRYYFS PTLVPAPVAS TTAPPPLSAY SSSPFFSPPP PPAPPPSPPL REALPLLSLA PASRRSRERR FGPGKDDSDD GDEEDGEEGK
101: QAPGSAASSS LHHNQKLAGR QLFADLNSKA TDDPMDSEAG GAAGDVTVAL HIGLPSAGTA ADLISGISAA DRAARDEEEE EDDRVSRELS GGGAEGDGDE
201: DGENEAAVAP VLGFSSTPIG RLNKGQYWIP TPTQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGIQP TAMLRLPCYC CAPGCRNNVD
301: HPRAKPLKDF RTLQTHYKRK HGLKPFLCRR CGKAFAVKGD WRTHEKNCGK LWYCLCGSEF KHKRSLKDHA RAFGQGHGTL GGAGLDDDDD CAISDVEHDG
401: AAAAARSL
101: QAPGSAASSS LHHNQKLAGR QLFADLNSKA TDDPMDSEAG GAAGDVTVAL HIGLPSAGTA ADLISGISAA DRAARDEEEE EDDRVSRELS GGGAEGDGDE
201: DGENEAAVAP VLGFSSTPIG RLNKGQYWIP TPTQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGIQP TAMLRLPCYC CAPGCRNNVD
301: HPRAKPLKDF RTLQTHYKRK HGLKPFLCRR CGKAFAVKGD WRTHEKNCGK LWYCLCGSEF KHKRSLKDHA RAFGQGHGTL GGAGLDDDDD CAISDVEHDG
401: AAAAARSL
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.