CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020923_P001	Maize	nucleus	75.61	77.68
TraesCS5B01G262400.1	Wheat	nucleus	62.08	68.63
TraesCS5D01G270700.1	Wheat	nucleus	61.64	67.8
TraesCS5A01G263200.1	Wheat	nucleus	61.64	67.64
EES15412	Sorghum	nucleus	54.55	57.48
EER98623	Sorghum	plastid	35.26	50.48
EER88644	Sorghum	nucleus, plastid	44.79	50.0
EER96535	Sorghum	nucleus	31.49	38.38
EES03920	Sorghum	plastid	32.82	36.72
EES18308	Sorghum	plastid	32.82	36.72
KXG37177	Sorghum	nucleus	18.4	20.96
OQU80698	Sorghum	nucleus	16.85	17.88
OQU85186	Sorghum	nucleus	13.97	17.31
KXG33778	Sorghum	nucleus	18.4	15.99

Protein Annotations

EnsemblPlants:EER96965	EnsemblPlantsGene:SORBI_3002G245500	EntrezGene:8055865	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF68
PFscan:PS50157	ProteinID:EER96965	ProteinID:EER96965.1	RefSeq:XP_002460444.1	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF57667	UniParc:UPI0001A837A1	UniProt:C5X3V5	MapMan:15.5.15	:	:

Description

hypothetical protein

Coordinates

chr2:+:63394954..63400729

Molecular Weight (calculated)

48806.7 Da

IEP (calculated)

6.116

GRAVY (calculated)

-0.780

Length

451 amino acids

Sequence
(BLAST)

001: MENPYTSFIN SHPSQHHHHR YYYHPAAPPA PAPTAYPSLL PFFAAHHQPP PAPAPTPPSP PLREALPLLS LAPAPPPPRG IGITRQQDEK RRGRRAPALD
101: SEEDKDEGDE EEEEDEGPTE SGGNHGQQKR LGQGALFADL NAKAAGDDPM DVEVEEAADG SGSGSAVGDV TVALRIGLPL PLPPAPTTTS TGAADLQVSD
201: LPAAGARRQQ HNHDDGGEEE DDDRENGGGE EEEEEEETTA VAAPLGFPST PIIGRLNMGQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS
301: QYRKGPESLR GIQPTAMLRL PCYCCSPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGRLWYCLC GSEFKHKRSL
401: KDHARAFGHG HGFVVGAGAG AGCGGGLDDD DDGAVSDVDQ HDGATAASRS M

Best Arabidopsis Sequence Match ( AT3G57670.1 )
(BLAST)

001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK

Arabidopsis Description

WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.