CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88427
EES03295
KXG22639
KXG29961

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22890.1	EER88427	AT4G01090.1	21798944
AT5G22890.1	EES03295	AT4G01090.1	21798944
AT5G22890.1	KXG22639	AT4G01090.1	21798944
AT5G22890.1	KXG29961	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031895_P001	Maize	nucleus	78.82	79.95
Os08t0562300-01	Rice	nucleus	52.94	58.44
TraesCS1D01G061200.1	Wheat	nucleus	52.0	57.11
TraesCS1A01G060200.1	Wheat	nucleus	51.53	57.03
TraesCS1B01G078700.1	Wheat	nucleus	50.82	55.1
GSMUA_Achr1P15330_001	Banana	cytosol	35.76	54.09
GSMUA_Achr11P...	Banana	nucleus	39.53	49.41
KRH22822	Soybean	plastid	32.24	49.28
PGSC0003DMT400001105	Potato	nucleus	34.12	45.6
CDY09179	Canola	nucleus	34.35	45.06
VIT_06s0061g00780.t01	Wine grape	nucleus	40.94	44.62
Solyc11g066420.1.1	Tomato	nucleus, plastid	37.88	41.93
AT5G22890.1	Thale cress	nucleus	36.24	41.29
CDY26965	Canola	nucleus	34.82	40.44
CDY69109	Canola	nucleus	34.82	39.78
CDY31715	Canola	nucleus	35.06	39.63
CDY26966	Canola	nucleus	35.06	39.63
CDX98183	Canola	nucleus	35.06	39.63
CDX74505	Canola	nucleus	35.06	39.63
Bra002438.1-P	Field mustard	nucleus	35.06	39.63
CDY09178	Canola	nucleus	34.12	39.3
Bra020224.1-P	Field mustard	nucleus	22.59	31.89
Bra020223.1-P	Field mustard	nucleus	21.65	30.98
KXG37177	Sorghum	nucleus	28.0	30.05
OQU85186	Sorghum	nucleus	24.71	28.85
KXG33778	Sorghum	nucleus	30.12	24.66
Bra002437.1-P	Field mustard	nucleus	12.24	20.88
EER98623	Sorghum	plastid	15.29	20.63
EER96535	Sorghum	nucleus	17.65	20.27
EES18308	Sorghum	plastid	18.35	19.35
EER88644	Sorghum	nucleus, plastid	17.41	18.32
EES03920	Sorghum	plastid	17.18	18.11
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	17.88	16.85
EES15412	Sorghum	nucleus	15.53	15.42

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A0A1Z5RAC4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719
GO:GO:0009987	GO:GO:0010044	GO:GO:0010200	GO:GO:0010447	InterPro:IPR013087	EnsemblPlants:OQU80698
ProteinID:OQU80698	ProteinID:OQU80698.1	PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF41	SMART:SM00355	EnsemblPlantsGene:SORBI_3007G166000	SUPFAM:SSF57667	UniParc:UPI000B4243D1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:60116057..60119139

Molecular Weight (calculated)

44899.9 Da

IEP (calculated)

8.300

GRAVY (calculated)

-0.357

Length

425 amino acids

Sequence
(BLAST)

001: MIGRGGNPYY LQNQQQQLFH HGHALDATMD GGGFMAEPPT PASSGCSAAD AQCHALLYYN LSVLRDKVQQ LQPLVGLAVA HDGPGPVAAA PGAGAVIQEI
101: IAAASSMMYA FQQLCGHGGA VPASASATAA QAQQGGTSSG VVVADAAATC GAGDNHQHQQ AAVIDHVMVM QQQWQQEHRY DGGYGGRIHH DSKTTTPVAA
201: AAAMPSSSHP RPTTAAVMMA EEDEDVGVGV AGGTIIELEA TELLAKYTHY CQVCGKGFKR DANLRMHMRA HGDEYKSSAA LANPAKAAAA AGGDAAAAST
301: SSSRSLYSCP QEGCRWNRKH AKFQPLKSVI CAKNHYKRSH CPKMYVCNRC NRKHFSVLSD LRTHEKHCGD HRWLCSCGTS FSRKDKLVGH LALFTGHQPA
401: VPLDRQANGG RRSSSSMSTS TQLGT

Best Arabidopsis Sequence Match ( AT5G22890.1 )
(BLAST)

001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK

Arabidopsis Description

STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.