CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010131_P001	Maize	nucleus, plastid	75.93	77.67
Zm00001d038297_P001	Maize	nucleus	69.23	71.17
KRH25207	Soybean	nucleus	24.07	65.54
Os05t0444200-01	Rice	plastid	62.28	64.52
GSMUA_Achr11P...	Banana	nucleus	31.76	57.14
EES03920	Sorghum	plastid	54.34	54.34
GSMUA_Achr5P26210_001	Banana	nucleus	35.48	51.25
KRH22690	Soybean	nucleus	38.46	48.59
KRH26622	Soybean	nucleus	38.21	47.98
PGSC0003DMT400018308	Potato	nucleus, plastid	37.72	46.63
VIT_06s0080g00270.t01	Wine grape	plastid	39.95	46.4
KRH30442	Soybean	nucleus	37.72	46.06
CDX93575	Canola	nucleus	37.97	45.4
Bra018638.1-P	Field mustard	nucleus	37.72	45.1
CDX95075	Canola	nucleus	37.72	44.97
TraesCS1D01G276200.1	Wheat	nucleus, plastid	40.69	44.69
TraesCS1A01G276800.1	Wheat	nucleus, plastid	41.44	44.06
AT1G08290.1	Thale cress	nucleus	36.72	43.92
TraesCS1B01G285900.1	Wheat	nucleus, plastid	40.2	43.78
CDY06308	Canola	nucleus	36.48	43.62
CDY22690	Canola	nucleus	36.23	43.32
Bra031621.1-P	Field mustard	nucleus	35.98	43.03
EER98623	Sorghum	plastid	33.5	42.86
EER88644	Sorghum	nucleus, plastid	39.7	39.6
Solyc06g074360.2.1	Tomato	nucleus	19.11	36.49
EER96535	Sorghum	nucleus	33.25	36.22
EES15412	Sorghum	nucleus	38.21	35.98
KRH25208	Soybean	nucleus, plastid	14.89	34.29
EER96965	Sorghum	cytosol, mitochondrion, nucleus, plastid	36.72	32.82
KXG37177	Sorghum	nucleus	19.6	19.95
OQU85186	Sorghum	nucleus	16.87	18.68
OQU80698	Sorghum	nucleus	19.35	18.35
KXG33778	Sorghum	nucleus	19.6	15.22

Protein Annotations

EnsemblPlants:EES18308	EnsemblPlantsGene:SORBI_3009G155200	EntrezGene:8072505	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF102	PFscan:PS50157
ProteinID:EES18308	ProteinID:EES18308.1	RefSeq:XP_002439878.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667
unigene:Sbi.20361	UniParc:UPI0001A8886B	UniProt:C5YYT0	MapMan:15.5.15	:	:

Description

hypothetical protein

Coordinates

chr9:+:51171453..51174490

Molecular Weight (calculated)

44370.2 Da

IEP (calculated)

7.700

GRAVY (calculated)

-0.671

Length

403 amino acids

Sequence
(BLAST)

001: MVLRACAVME AGTFSVPFYE WLKPRSSSSS PPPSPSSSSS TTSSTTLSTP SIDQLAAVDE RHAMTCLPLL GRLEGRAATP DHGHNNPIKE ELLSNNIATT
101: GGATRREEAA AAGVDLNIGL PAAAATTGGR GYSSEEVPMD EEDDDEEEDF EEEEDEKHEK CKVEEAGGEQ QHGEMVVEPV EQRSDYLRVG GEEGIKGFVG
201: SRGRRYWIPT PAQILVGPVQ FICHVCSKTF NRYNNMQMHM WGHGREYRKG PESLKGTQAA TLALLKLPCY CCAAGCRNNV AHPRARPLKD FRTLQTHYKR
301: KHGDKHFGCR RCGKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGGHFS VTPDQAAAVV PRPSLLMKPS KERIIRFDQQ GAAAPWNGAH
401: AHA

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.