Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074360.2.1 | Tomato | nucleus | 56.44 | 87.2 |
| KRH25207 | Soybean | nucleus | 37.12 | 81.76 |
| PGSC0003DMT400017556 | Potato | nucleus | 33.44 | 76.22 |
| PGSC0003DMT400096573 | Potato | cytosol, mitochondrion, nucleus, peroxisome | 32.52 | 69.28 |
| KRH22690 | Soybean | nucleus | 57.98 | 59.25 |
| KRH26622 | Soybean | nucleus | 57.67 | 58.57 |
| VIT_06s0080g00270.t01 | Wine grape | plastid | 61.35 | 57.64 |
| KRH30442 | Soybean | nucleus | 56.75 | 56.06 |
| CDX95075 | Canola | nucleus | 54.29 | 52.37 |
| Bra018638.1-P | Field mustard | nucleus | 53.99 | 52.23 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 44.48 | 51.97 |
| CDX93575 | Canola | nucleus | 53.68 | 51.93 |
| AT1G08290.1 | Thale cress | nucleus | 52.76 | 51.04 |
| PGSC0003DMT400077822 | Potato | nucleus | 48.16 | 49.37 |
| CDY22690 | Canola | nucleus | 50.92 | 49.26 |
| CDY06308 | Canola | nucleus | 50.61 | 48.96 |
| Bra031621.1-P | Field mustard | nucleus | 50.0 | 48.37 |
| PGSC0003DMT400035408 | Potato | nucleus | 49.69 | 46.69 |
| Os01t0859100-01 | Rice | nucleus, plastid | 49.08 | 42.55 |
| TraesCS3D01G364800.1 | Wheat | nucleus | 47.24 | 41.96 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 47.24 | 41.4 |
| Os05t0444200-01 | Rice | plastid | 47.85 | 40.1 |
| KRH25208 | Soybean | nucleus, plastid | 21.47 | 40.0 |
| EES03920 | Sorghum | plastid | 47.55 | 38.46 |
| Zm00001d042781_P001 | Maize | nucleus | 46.93 | 37.87 |
| EES18308 | Sorghum | plastid | 46.63 | 37.72 |
| Zm00001d038297_P001 | Maize | nucleus | 44.48 | 36.99 |
| Zm00001d010131_P001 | Maize | nucleus, plastid | 43.87 | 36.29 |
| TraesCS3A01G371700.1 | Wheat | cytosol, plastid | 47.24 | 36.07 |
| TraesCS1D01G276200.1 | Wheat | nucleus, plastid | 40.49 | 35.97 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 40.49 | 35.68 |
| TraesCS1A01G276800.1 | Wheat | nucleus, plastid | 40.49 | 34.83 |
| PGSC0003DMT400079144 | Potato | nucleus | 44.17 | 30.19 |
| PGSC0003DMT400001105 | Potato | nucleus | 19.02 | 19.5 |
| PGSC0003DMT400008898 | Potato | extracellular, nucleus | 18.71 | 16.58 |
| PGSC0003DMT400067092 | Potato | nucleus | 21.78 | 16.4 |
| PGSC0003DMT400023881 | Potato | nucleus | 23.62 | 15.01 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400018308 | EnsemblPlantsGene:PGSC0003DMG400007112 | EntrezGene:102604176 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF58 |
| PFAM:PF12874 | PFscan:PS50157 | PGSC:PGSC0003DMG400007112 | RefSeq:XP_006347241.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00029652CD | UniProt:M1AAE8 | MapMan:15.5.15 | : |
Description
TRANSPARENT TESTA 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007112]
Coordinates
chr6:+:54956823..54960104
Molecular Weight (calculated)
37476.3 Da
IEP (calculated)
8.482
GRAVY (calculated)
-0.902
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIRDINFHV HQDNMDVCFD QTPNFIEWLK PSSNNSSPSS SSSSTIIQSN PMTTFLKLPH LYNPQEIQCL PLLSKLTDPK TEKKEEDYQV MKEENMEKVR
101: VSLHIGLPDV DETKPFSSYK KEEENKEKNS TIINKGCNFN SESRFWIPTP AQILVGPMQF ACNICNKTFN RYNNMQMHMW GHGSEYRKGP ESLRGTQPAA
201: MLRLPCYCCA QECKNNINHP RAKPLKDFRT LQTHYKRKHG TKSFSCRKCG KTFAVKGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIRS FGKGHSPHPS
301: LDGFQDKYCI NSSTGGSSDD DDDEVN
101: VSLHIGLPDV DETKPFSSYK KEEENKEKNS TIINKGCNFN SESRFWIPTP AQILVGPMQF ACNICNKTFN RYNNMQMHMW GHGSEYRKGP ESLRGTQPAA
201: MLRLPCYCCA QECKNNINHP RAKPLKDFRT LQTHYKRKHG TKSFSCRKCG KTFAVKGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIRS FGKGHSPHPS
301: LDGFQDKYCI NSSTGGSSDD DDDEVN
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.