Factsheet for TraesCS3A01G371700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G364800.1	Wheat	nucleus	82.44	95.91
TraesCS3B01G404000.1	Wheat	nucleus	80.56	92.47
Os01t0859100-01	Rice	nucleus, plastid	63.93	72.61
EES03920	Sorghum	plastid	61.36	65.01
KRH25207	Soybean	nucleus	22.01	63.51
Zm00001d042781_P001	Maize	nucleus	58.78	62.13
GSMUA_Achr11P...	Banana	nucleus	29.04	55.36
GSMUA_Achr5P26210_001	Banana	nucleus	33.49	51.25
KRH22690	Soybean	nucleus	36.07	48.28
PGSC0003DMT400018308	Potato	nucleus, plastid	36.07	47.24
KRH26622	Soybean	nucleus	35.13	46.73
VIT_06s0080g00270.t01	Wine grape	plastid	36.77	45.24
KRH30442	Soybean	nucleus	34.89	45.15
TraesCS1A01G276800.1	Wheat	nucleus, plastid	38.88	43.8
TraesCS5A01G175400.1	Wheat	nucleus	31.38	43.51
Bra018638.1-P	Field mustard	nucleus	33.72	42.73
CDX95075	Canola	nucleus	33.72	42.6
CDX93575	Canola	nucleus	33.49	42.43
CDY22690	Canola	nucleus	33.02	41.84
CDY06308	Canola	nucleus	32.55	41.25
AT1G08290.1	Thale cress	nucleus	32.55	41.25
Bra031621.1-P	Field mustard	nucleus	32.08	40.65
TraesCS7A01G404400.1	Wheat	nucleus	34.89	40.49
Solyc06g074360.2.1	Tomato	nucleus	18.74	37.91
TraesCS5A01G179800.1	Wheat	nucleus	30.91	37.18
KRH25208	Soybean	nucleus, plastid	14.52	35.43
TraesCS5A01G263200.1	Wheat	nucleus	33.96	35.28
TraesCS1A01G060200.1	Wheat	nucleus	18.03	20.05
TraesCS4A01G352700.1	Wheat	nucleus	17.33	17.7
TraesCS6A01G201100.1	Wheat	nucleus	12.88	14.91
TraesCS3A01G381900.1	Wheat	nucleus	16.16	13.32

Protein Annotations

EnsemblPlants:TraesCS3A01G371700.1	EnsemblPlantsGene:TraesCS3A01G371700	Gene3D:3.30.160.60	ncoils:Coil	PANTHER:PTHR10593	PANTHER:PTHR10593:SF57
SEG:seg	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:621892486..621895043

Molecular Weight (calculated)

46513.5 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.635

Length

427 amino acids

Sequence
(BLAST)

001: MGLRTCGAME GEHVVASPFF EWLKPPPASP SSSRSSSTFS SSSSSMASGH QEDRSSVACL PLLRMLEEGK GAGGDHKHPA PAVKEEIMGS GAAGVLGPGV
101: DLNIGLPVGG SCDDDIMEEE EGQEEDDDHD CDEEEEEEMD ELEPTHGACK VEAEEKEEHG EPVVSVEGTN SVSMPEFGVV GAEGGVPMGC EYWIPTPAQI
201: LVGPVQFVCH VCNKSFNRYN NMQRSEDLSP IPTPPNGSVE VEPDLSNTGH FPNGIAGVWC LNGTQGSSPR SSKANQVSIY SKEKMHMWGH GREYRKGPES
301: LKGTQTLALL KLPCYCCAAG CRNSVAHPRA RPLKDFRTLQ THYKRKHGAR PFRCRRCAKP FAVKGDWRTH EKNCGKRWFC ACGSDFKHKR SLNDHVRSFG
401: GDHLPVALDG ATAPAPAEDR RIIRFQR

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.