Factsheet for PGSC0003DMT400008898

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 28961394

msms PMID: 28961394 doi

E Elagamey, A Sinha, K Narula, MAE Abdellatef, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India., Plant Pathology Research Institute, Agricultural Research Center (ARC), Giza, Egypt.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g056320.1.1	Tomato	nucleus	93.75	92.49
KRG97571	Soybean	nucleus, plastid	48.91	53.25
KRH59322	Soybean	nucleus	43.75	49.24
VIT_07s0141g00020.t01	Wine grape	vacuole	55.43	48.57
KRH43171	Soybean	nucleus, plastid	41.3	47.8
KRH31302	Soybean	nucleus, plastid	46.74	47.25
GSMUA_Achr10P...	Banana	nucleus	44.29	46.44
OQU85186	Sorghum	nucleus	38.32	38.74
TraesCS6D01G188100.1	Wheat	nucleus	37.77	37.67
TraesCS6B01G227100.1	Wheat	nucleus	37.77	37.47
TraesCS6A01G201100.1	Wheat	nucleus	37.5	37.4
Os02t0572900-01	Rice	cytosol, extracellular, nucleus	38.59	36.98
PGSC0003DMT400001105	Potato	nucleus	30.16	34.91
Zm00001d016911_P001	Maize	nucleus	39.13	34.45
PGSC0003DMT400017556	Potato	nucleus	13.32	34.27
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	13.04	31.37
PGSC0003DMT400067092	Potato	nucleus	35.6	30.25
PGSC0003DMT400023881	Potato	nucleus	38.32	27.49
PGSC0003DMT400077822	Potato	nucleus	18.75	21.7
PGSC0003DMT400035408	Potato	nucleus	18.75	19.88
PGSC0003DMT400018308	Potato	nucleus, plastid	16.58	18.71
PGSC0003DMT400079144	Potato	nucleus	16.3	12.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400008898	EnsemblPlantsGene:PGSC0003DMG400003459	EntrezGene:102583735	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71
PFscan:PS50157	PGSC:PGSC0003DMG400003459	RefSeq:XP_006367873.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000295BDD0	UniProt:M0ZV91	MapMan:15.5.15	:	:

Description

TRANSPARENT TESTA 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003459]

Coordinates

chr4:-:50438398..50439870

Molecular Weight (calculated)

41266.9 Da

IEP (calculated)

6.899

GRAVY (calculated)

-0.540

Length

368 amino acids

Sequence
(BLAST)

001: MSFSGDLRHL PPNTIGDDPR IPLLNLSAVQ TRMDSLQKFL SDSVNSNNLL GQHQMNMVSD EITSAIHQII VNGAALLSST RLTNPPPPQP PSSVEMKINL
101: KSNHKRSFPE FDRRDFESKV EVLDEEEEDG GDWEIIELDA VELLAEHIHF CDFCGKGFKR DANLRMHMRA HGNQYKTAEA LAKPEKCIDS SNSNKRRRFS
201: CPFIGCTRNK THNKFRPLKS VICVKNHFKR SHCPKMYSCT RCNKKSFSVL ADLKSHLKHC GETKWKCSCG TSFSRKDKLF GHMALFEGHM PAVETAPAVE
301: NEEEVGMDIN DGAGNGLLDI RTGSDNGFLD RLMLDGFESI DSYCFQDLFG SSSPNGLNTV SDSTGWFV

Best Arabidopsis Sequence Match ( AT1G34370.1 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.