Factsheet for TraesCS6B01G227100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G188100.1	Wheat	nucleus	98.65	99.19
TraesCS6A01G201100.1	Wheat	nucleus	97.57	98.1
OQU85186	Sorghum	nucleus	70.89	72.25
Os02t0572900-01	Rice	cytosol, extracellular, nucleus	72.24	69.79
Zm00001d016911_P001	Maize	nucleus	71.43	63.4
GSMUA_Achr10P...	Banana	nucleus	44.2	46.72
KRG97571	Soybean	nucleus, plastid	39.89	43.79
KRH59322	Soybean	nucleus	37.2	42.2
KRH43171	Soybean	nucleus, plastid	35.58	41.51
KRH31302	Soybean	nucleus, plastid	38.81	39.56
Solyc04g056320.1.1	Tomato	nucleus	38.01	37.8
PGSC0003DMT400008898	Potato	extracellular, nucleus	37.47	37.77
VIT_07s0141g00020.t01	Wine grape	vacuole	41.51	36.67
TraesCS5B01G172600.1	Wheat	mitochondrion	11.86	32.12
TraesCS5B01G519700.1	Wheat	nucleus	32.61	29.16
TraesCS1B01G078700.1	Wheat	nucleus	29.65	28.06
TraesCS3B01G414500.1	Wheat	nucleus	31.81	22.69
TraesCS5B01G177600.1	Wheat	nucleus, plastid	18.06	21.2
TraesCS7B01G304000.1	Wheat	nucleus	19.14	19.19
TraesCS1B01G285900.1	Wheat	nucleus, plastid	16.98	17.03
TraesCS5B01G262400.1	Wheat	nucleus	18.33	16.67
TraesCS7B01G147400.1	Wheat	nucleus	18.33	16.27
TraesCS3B01G404000.1	Wheat	nucleus	15.09	15.05

Protein Annotations

EnsemblPlants:TraesCS6B01G227100.1	EnsemblPlantsGene:TraesCS6B01G227100	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr6B:+:350828202..350829317

Molecular Weight (calculated)

39240.2 Da

IEP (calculated)

6.565

GRAVY (calculated)

-0.309

Length

371 amino acids

Sequence
(BLAST)

001: MDSTTNQFAG AAAAAGASSA NTAPLPAMLA DALIGAGAGG GDGDPSAALQ RLAALGDRMA AVRRLLVASI SGESQPLSSS DIQSVSSEIS SAAHLVVLNA
101: ASLLSSSLPF PAPSATPAPP APIQELPAAA STADVLPQEA TKGYDVVELD ADELLAEHAH FCNICGKGFR RDANLRMHMR AHGDRFKTLD ALSRPGQAKP
201: VDGRDVRFSC PFTGCNRNRA HHRFRPLKSA VCARNHFRRS HCPKLYACER CGGKKRFAVL ADLRGHLRHC GEEAQWRCSC GTTFSRKDKL FGHLALFEGH
301: MPAMSPPNKD AVTTTTEAPL DIMDEGGIEE QEDGGEGGFD PEFFKEWMEE LKDDGVPAGG TVWPGRAAAG Q

Best Arabidopsis Sequence Match ( AT1G34370.1 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.