Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G519100.1 | Wheat | nucleus | 89.4 | 90.05 |
| TraesCS4A01G352700.1 | Wheat | nucleus | 88.43 | 87.8 |
| Os03t0838800-00 | Rice | nucleus | 53.73 | 60.76 |
| KXG37177 | Sorghum | nucleus | 53.01 | 55.56 |
| Zm00001d034783_P001 | Maize | nucleus | 46.75 | 53.01 |
| TraesCS5B01G172600.1 | Wheat | mitochondrion | 12.05 | 36.5 |
| TraesCS3B01G414500.1 | Wheat | nucleus | 40.96 | 32.69 |
| TraesCS6B01G227100.1 | Wheat | nucleus | 29.16 | 32.61 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 27.71 | 29.34 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 19.76 | 22.16 |
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 16.87 | 22.15 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 18.31 | 20.43 |
| TraesCS5B01G262400.1 | Wheat | nucleus | 19.76 | 20.1 |
| TraesCS7B01G147400.1 | Wheat | nucleus | 19.76 | 19.62 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 16.63 | 18.65 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G519700.1 | EnsemblPlantsGene:TraesCS5B01G519700 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF71 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5B:-:682224576..682226090
Molecular Weight (calculated)
45118.6 Da
IEP (calculated)
6.566
GRAVY (calculated)
-0.543
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSSDHFDGN NHLYLQPNHQ RGTGGMEACD LERIGHEQSR HGQEAGEHRS DPSAALTTYL TFLEHKIGHL RGILCSTPRH QQQQRAIVSA ELRCIIVQLV
101: SIANDLASDS GTGNGVGAAD AFTFERCEER SPSLSNATHD DSDDHADAGG EEEEEGDGPY EVVQIEKEEI LAPHAHCCKV CGKGFKRDAN LRMHMRGHGD
201: QYKAPGALAR PGSPTPANGR RFFYSCPYAG CKRNREHRDF QPLKTPVCVK NHYRRSHCDK SHVCRRCGVK RFSVLADLRT HEKHCGRDRW VCSCGVSFSR
301: KDKLFAHVAI FDGGHTPALP PSDDEATGHC TAATATTTAI DSIVPGSTQP LPAGSEALNV VDQSFSGQML DGLSCSGAKG GIDDVRAKLS SPVGIDFCDF
401: DGFDLLGAVA MDFNF
101: SIANDLASDS GTGNGVGAAD AFTFERCEER SPSLSNATHD DSDDHADAGG EEEEEGDGPY EVVQIEKEEI LAPHAHCCKV CGKGFKRDAN LRMHMRGHGD
201: QYKAPGALAR PGSPTPANGR RFFYSCPYAG CKRNREHRDF QPLKTPVCVK NHYRRSHCDK SHVCRRCGVK RFSVLADLRT HEKHCGRDRW VCSCGVSFSR
301: KDKLFAHVAI FDGGHTPALP PSDDEATGHC TAATATTTAI DSIVPGSTQP LPAGSEALNV VDQSFSGQML DGLSCSGAKG GIDDVRAKLS SPVGIDFCDF
401: DGFDLLGAVA MDFNF
001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
Arabidopsis Description
STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.