Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- peroxisome 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0282100-00 | Rice | cytosol, mitochondrion, nucleus | 83.94 | 79.86 |
| TraesCS5A01G175400.1 | Wheat | nucleus | 93.43 | 41.56 |
| TraesCS5D01G179700.1 | Wheat | nucleus | 92.7 | 41.23 |
| EER98623 | Sorghum | plastid | 83.94 | 36.51 |
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 65.69 | 28.48 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 75.91 | 28.11 |
| TraesCS5B01G262400.1 | Wheat | nucleus | 73.72 | 24.75 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 64.96 | 24.05 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 64.96 | 23.92 |
| TraesCS7B01G147400.1 | Wheat | nucleus | 71.53 | 23.45 |
| TraesCS5B01G519700.1 | Wheat | nucleus | 36.5 | 12.05 |
| TraesCS6B01G227100.1 | Wheat | nucleus | 32.12 | 11.86 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 33.58 | 11.73 |
| TraesCS3B01G414500.1 | Wheat | nucleus | 33.58 | 8.85 |
| Os09t0282300-00 | Rice | nucleus | 0.73 | 0.58 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G172600.1 | EnsemblPlantsGene:TraesCS5B01G172600 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF67 | PFscan:PS50157 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5B:-:317059265..317059678
Molecular Weight (calculated)
15868.2 Da
IEP (calculated)
10.942
GRAVY (calculated)
-0.971
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMHMWGHGS QYRRGPDSLR GTQPAAMLRL PCFCCAPGCR SHVDHPRAWP LKDFRTLQTH YKRRHCAKPF LCRKCGKALA VRGDWRTHEK NCGRRWHCTC
101: GSDFKHKRSL KDHIRAFGQD HVERPPAAKM GPSSHGR
101: GSDFKHKRSL KDHIRAFGQD HVERPPAAKM GPSSHGR
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.