Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G519700.1 | Wheat | nucleus | 90.05 | 89.4 |
| TraesCS4A01G352700.1 | Wheat | nucleus | 88.59 | 87.32 |
| Os03t0838800-00 | Rice | nucleus | 55.34 | 62.13 |
| KXG37177 | Sorghum | nucleus | 53.16 | 55.3 |
| Zm00001d034783_P001 | Maize | nucleus | 46.84 | 52.73 |
| TraesCS3D01G054300.1 | Wheat | nucleus | 26.7 | 40.89 |
| TraesCS6D01G188100.1 | Wheat | nucleus | 29.37 | 32.79 |
| TraesCS3D01G375000.1 | Wheat | nucleus | 40.53 | 32.12 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 28.16 | 29.97 |
| TraesCS5D01G179700.1 | Wheat | nucleus | 17.72 | 23.7 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 19.66 | 21.89 |
| TraesCS5D01G270700.1 | Wheat | nucleus | 20.15 | 20.24 |
| TraesCS3D01G364800.1 | Wheat | nucleus | 17.72 | 19.89 |
| TraesCS5D01G184400.1 | Wheat | nucleus | 16.99 | 19.72 |
| TraesCS7D01G242600.1 | Wheat | nucleus | 19.9 | 19.71 |
| TraesCS1D01G276200.1 | Wheat | nucleus, plastid | 17.23 | 19.35 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G519100.1 | EnsemblPlantsGene:TraesCS5D01G519100 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF71 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr5D:-:540000135..540001373
Molecular Weight (calculated)
44557.1 Da
IEP (calculated)
6.606
GRAVY (calculated)
-0.490
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSSDHFASN NDLYLQPNHQ RGAGIMEACD LDRSGHGQSR HGQEAEEHRS DPSAALTTYL TFLEHKIGHL RGILCSTPRH PQQQRAIVSA ELRCIIVQLV
101: SIANYLDSDS GAGAADASPF EPSEERSPSL SNGTHDDSGD GHAEAAGEEE IEGEGPYEVV QIEKEEILAP HAHCCKVCGK GFKRDANLRM HMRGHGDQYK
201: APGALARPGS PAPGAGTGRR FFYSCPYAGC KRNREHRDFQ PLKTPVCVKN HYRRSHCDKS HVCRRCGVKR FSVLADLRTH EKHCGRDRWV CSCGVSFSRK
301: DKLFAHVAIF DGGHTPALPP SDDEAIGHCT AATAIDSILV PSSGQPLPVS GGEAVNVVDQ SFSGQMLDGL SFSGAKGGMD DGRAKLSSPI GIDFCDFDGF
401: DLLGAVAMDF NF
101: SIANYLDSDS GAGAADASPF EPSEERSPSL SNGTHDDSGD GHAEAAGEEE IEGEGPYEVV QIEKEEILAP HAHCCKVCGK GFKRDANLRM HMRGHGDQYK
201: APGALARPGS PAPGAGTGRR FFYSCPYAGC KRNREHRDFQ PLKTPVCVKN HYRRSHCDKS HVCRRCGVKR FSVLADLRTH EKHCGRDRWV CSCGVSFSRK
301: DKLFAHVAIF DGGHTPALPP SDDEAIGHCT AATAIDSILV PSSGQPLPVS GGEAVNVVDQ SFSGQMLDGL SFSGAKGGMD DGRAKLSSPI GIDFCDFDGF
401: DLLGAVAMDF NF
001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
Arabidopsis Description
STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.