Factsheet for TraesCS1D01G276200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G285900.1	Wheat	nucleus, plastid	91.01	90.27
TraesCS1A01G276800.1	Wheat	nucleus, plastid	93.19	90.24
KRH25207	Soybean	nucleus	26.43	65.54
GSMUA_Achr11P...	Banana	nucleus	34.06	55.8
GSMUA_Achr5P26210_001	Banana	nucleus	34.33	45.16
TraesCS3D01G364800.1	Wheat	nucleus	44.41	44.41
KRH26622	Soybean	nucleus	38.42	43.93
KRH22690	Soybean	nucleus	38.15	43.89
TraesCS5D01G184400.1	Wheat	nucleus	41.42	42.82
KRH30442	Soybean	nucleus	37.6	41.82
Os05t0444200-01	Rice	plastid	44.14	41.65
EES18308	Sorghum	plastid	44.69	40.69
PGSC0003DMT400018308	Potato	nucleus, plastid	35.97	40.49
Zm00001d010131_P001	Maize	nucleus, plastid	43.32	40.36
VIT_06s0080g00270.t01	Wine grape	plastid	38.15	40.35
Zm00001d038297_P001	Maize	nucleus	43.05	40.31
CDY22690	Canola	nucleus	36.51	39.76
Bra018638.1-P	Field mustard	nucleus	36.24	39.47
CDY06308	Canola	nucleus	36.24	39.47
CDX93575	Canola	nucleus	36.24	39.47
AT1G08290.1	Thale cress	nucleus	36.24	39.47
CDX95075	Canola	nucleus	36.24	39.35
TraesCS5D01G179700.1	Wheat	nucleus	32.7	38.96
Bra031621.1-P	Field mustard	nucleus	35.69	38.87
TraesCS7D01G397800.1	Wheat	nucleus	36.24	35.95
TraesCS7D01G242600.1	Wheat	nucleus	36.78	32.45
TraesCS5D01G270700.1	Wheat	nucleus	36.24	32.44
Solyc06g074360.2.1	Tomato	nucleus	15.26	26.54
KRH25208	Soybean	nucleus, plastid	11.99	25.14
TraesCS3D01G054300.1	Wheat	nucleus	15.53	21.19
TraesCS1D01G061200.1	Wheat	nucleus	19.62	18.6
TraesCS5D01G519100.1	Wheat	nucleus	19.35	17.23
TraesCS6D01G188100.1	Wheat	nucleus	17.17	17.07
TraesCS3D01G375000.1	Wheat	nucleus	18.26	12.88

Protein Annotations

EnsemblPlants:TraesCS1D01G276200.1	EnsemblPlantsGene:TraesCS1D01G276200	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF102	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr1D:+:372359409..372361062

Molecular Weight (calculated)

40519.9 Da

IEP (calculated)

7.798

GRAVY (calculated)

-0.599

Length

367 amino acids

Sequence
(BLAST)

001: MALSAYAMES AGLGVRYFEW LRPRSPRASS PSSMPSSLSS PSSDCLVPGE DHRSTMLCLP LLGRVGAGEE TTSGGTPVGA QTSPIKEELS GITEDAGVDL
101: NIGLPAGGGY CSEEEVPPMA MSMDEDEEEE EVETEDEEKP RYERFKVETG VQVEHSEILV ESVEGSDRVS IGREETSGCR HRRFWIPTPA QILIGAVQFV
201: CHVCSKTFNR YNNMQMHMWG HGREYRKGPD SLKGAAGQST HAAALALLRL PCYCCAAGCR NNVAHPRARP LKDFRTLQTH YRRKHGAKPF ACRRCAKPFA
301: VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGGG HRPVAPADAA AAPAPTQQRR ERIIRFD

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.