Factsheet for TraesCS3D01G375000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G414500.1	Wheat	nucleus	97.69	97.69
TraesCS3A01G381900.1	Wheat	nucleus	96.54	96.91
Os01t0871200-03	Rice	nucleus	79.42	79.12
Zm00001d012260_P001	Maize	nucleus	78.85	79.0
KXG33778	Sorghum	nucleus	78.46	78.61
Zm00001d042686_P001	Maize	nucleus	75.96	76.25
GSMUA_Achr5P01170_001	Banana	nucleus	44.62	59.03
Solyc06g065440.1.1	Tomato	cytosol	38.27	56.7
GSMUA_Achr6P18840_001	Banana	nucleus	42.31	53.27
TraesCS3D01G054300.1	Wheat	nucleus	26.73	51.67
PGSC0003DMT400067092	Potato	nucleus	42.88	51.5
VIT_18s0072g00840.t01	Wine grape	nucleus	51.54	50.85
KRH34957	Soybean	nucleus, plastid	48.65	49.9
CDY12041	Canola	nucleus	39.23	49.88
KRG91822	Soybean	nucleus, plastid	48.46	49.51
Solyc11g017140.1.1	Tomato	nucleus	46.15	49.48
Bra040971.1-P	Field mustard	nucleus	40.38	49.3
CDY03148	Canola	nucleus	40.58	48.96
KRH08551	Soybean	nucleus, plastid	49.04	48.94
CDY46467	Canola	nucleus	44.81	47.75
AT1G34370.1	Thale cress	nucleus	45.38	47.29
Bra036750.1-P	Field mustard	nucleus	44.62	47.25
CDX91774	Canola	nucleus	45.0	47.18
PGSC0003DMT400023881	Potato	nucleus	46.54	47.17
TraesCS5D01G519100.1	Wheat	nucleus	32.12	40.53
TraesCS1D01G061200.1	Wheat	nucleus	25.0	33.59
TraesCS6D01G188100.1	Wheat	nucleus	22.88	32.25
TraesCS5D01G179700.1	Wheat	nucleus	12.5	21.1
TraesCS7D01G397800.1	Wheat	nucleus	13.85	19.46
TraesCS5D01G184400.1	Wheat	nucleus	13.27	19.44
TraesCS5D01G270700.1	Wheat	nucleus	15.0	19.02
TraesCS3D01G364800.1	Wheat	nucleus	13.27	18.8
TraesCS7D01G242600.1	Wheat	nucleus	14.62	18.27
TraesCS1D01G276200.1	Wheat	nucleus, plastid	12.88	18.26

Protein Annotations

MapMan:15.5.15	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010044	GO:GO:0010447
InterPro:IPR013087	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41	SMART:SM00355
SUPFAM:SSF57667	EnsemblPlantsGene:TraesCS3D01G375000	EnsemblPlants:TraesCS3D01G375000.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

No Description!

Coordinates

chr3D:+:488383528..488385090

Molecular Weight (calculated)

56780.9 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.564

Length

520 amino acids

Sequence
(BLAST)

001: MRKSSEISMK ASSSMASDAS GNTEPGQQGV RFSSMDQSCF ARPGQSIPGY PPFFGPQSSN FYLPDDSVAK ACDLFEPNPP QNNPVADWDP QAMLSNLTFL
101: EQKIKQVKDI VQSMGNRGSQ DAGGSCELAA KQQLVTADLT SIIIQLISTA GSMLPSMKTP LLSSNPAVRQ LNTPGSPMGF GSIVNQRPST IREEVVNDIS
201: KTSDYEELMN TLNTAHDEKD DLIKCPNPCV GEGPEPVPME DHDVKESDDG GEAEHLPPGS YVVLQLEKEE ILAPHTHFCV ICGKGFKRDA NLRMHMRGHG
301: DEYKTPAALA KPMRDSGSDP TPVTRYSCPY VGCKRNKEHR KFQPLKTILC VKNHYKRSHC DKRYTCSRCN TKKFSVIADL KTHEKHCGRD KWLCSCGTTF
401: SRKDKLFGHV ALFQGHTPAL PMDDIKASGA LEQPQGSEAM DDMVASTGYN FPGSTSDGIP NLDMKVADDT RGYFSPLNFD PCFGALDDFA RPGFDISENP
501: FSFLPSGPGS CSFGQLSGDS

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.