Factsheet for TraesCS3D01G054300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023558_P001	Maize	nucleus	52.42	30.19
Os12t0170400-01	Rice	nucleus	50.19	29.03
TraesCS3D01G375000.1	Wheat	nucleus	51.67	26.73
TraesCS5D01G519100.1	Wheat	nucleus	40.89	26.7
TraesCS1D01G061200.1	Wheat	nucleus	36.06	25.06
TraesCS6D01G188100.1	Wheat	nucleus	32.71	23.85
TraesCS5D01G179700.1	Wheat	nucleus	21.56	18.83
TraesCS3D01G364800.1	Wheat	nucleus	23.42	17.17
TraesCS5D01G184400.1	Wheat	nucleus	21.56	16.34
TraesCS1D01G276200.1	Wheat	nucleus, plastid	21.19	15.53
TraesCS7D01G397800.1	Wheat	nucleus	21.19	15.41
TraesCS7D01G242600.1	Wheat	nucleus	22.3	14.42
TraesCS5D01G270700.1	Wheat	nucleus	21.93	14.39

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010044	GO:GO:0043620	GO:GO:0045893
InterPro:IPR013087	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41	SMART:SM00355
EnsemblPlantsGene:TraesCS3D01G054300	EnsemblPlants:TraesCS3D01G054300.1	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:22328841..22329650

Molecular Weight (calculated)

29999.7 Da

IEP (calculated)

7.596

GRAVY (calculated)

-0.534

Length

269 amino acids

Sequence
(BLAST)

001: MANLAASGSG TSSSSVRNRA VSEDHKEEMH SPDYEELFKG LTDYAVEVEG IEIGNSLLVD EHDTKDGNEV GIGIDADSLP PGTYELLQLE EDEILAPHTH
101: FCAICGKGFK RDANLRMHMH GHGDEYKSPA ALAKPPRDES LDHAAIVKRY SCPVAGCKRN RLHKGFLPLK TILCVKNHYK RSHCVKNYTC SRCHAKKFSV
201: MADLKTHEKH CGQVRWVCSC GTTFTRKDKL FTHVGLFKGH TLLLPADEPE AHTRWLTQEA IKNQPRVVA

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.