Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G262400.1 | Wheat | nucleus | 95.37 | 95.83 |
| TraesCS5A01G263200.1 | Wheat | nucleus | 94.63 | 94.4 |
| Zm00001d020923_P001 | Maize | nucleus | 70.24 | 65.6 |
| TraesCS7D01G242600.1 | Wheat | nucleus | 63.41 | 62.5 |
| EER96965 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 67.8 | 61.64 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 48.54 | 53.78 |
| TraesCS5D01G179700.1 | Wheat | nucleus | 40.24 | 53.57 |
| TraesCS3D01G364800.1 | Wheat | nucleus | 35.61 | 39.78 |
| TraesCS5D01G184400.1 | Wheat | nucleus | 32.68 | 37.75 |
| TraesCS1D01G276200.1 | Wheat | nucleus, plastid | 32.44 | 36.24 |
| TraesCS3D01G054300.1 | Wheat | nucleus | 14.39 | 21.93 |
| TraesCS5D01G519100.1 | Wheat | nucleus | 20.24 | 20.15 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 18.78 | 19.9 |
| TraesCS6D01G188100.1 | Wheat | nucleus | 16.83 | 18.7 |
| TraesCS3D01G375000.1 | Wheat | nucleus | 19.02 | 15.0 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G270700.1 | EnsemblPlantsGene:TraesCS5D01G270700 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF68 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr5D:+:374387655..374392179
Molecular Weight (calculated)
43920.1 Da
IEP (calculated)
6.737
GRAVY (calculated)
-0.647
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MENPYTTFLK NYQQHRYYFS PTPVPAPVAS TTAPPPLSAY SSSPFFSPPP PPAPPSSPPL REALPLLSLA PASRRSRERR SGPGPDDSDD GDEEDGEEGK
101: QAPGPAASSS LHHNQQLAGR QLFADLNSKA TDDAMDSEAG GAAGDVTVAL HIGLPSAGTA AGLISGISAA ARAARDDEEE EDDRVSRELS GGGAEGDGDD
201: DGENEAAVAP VLGFASTPIG RLNKGQYWIP TPTQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGIQP TAMLRLPCYC CAPGCRNNVD
301: HPRAKPLKDF RTLQTHYKRK HGLKPFLCRR CGKAFAVKGD WRTHEKNCGK LWYCLCGSEF KHKRSLKDHA RAFGQGHGAL GGAGLDDDDD CAVSDVEHDG
401: AAAAVAARSP
101: QAPGPAASSS LHHNQQLAGR QLFADLNSKA TDDAMDSEAG GAAGDVTVAL HIGLPSAGTA AGLISGISAA ARAARDDEEE EDDRVSRELS GGGAEGDGDD
201: DGENEAAVAP VLGFASTPIG RLNKGQYWIP TPTQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGIQP TAMLRLPCYC CAPGCRNNVD
301: HPRAKPLKDF RTLQTHYKRK HGLKPFLCRR CGKAFAVKGD WRTHEKNCGK LWYCLCGSEF KHKRSLKDHA RAFGQGHGAL GGAGLDDDDD CAVSDVEHDG
401: AAAAVAARSP
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.