Factsheet for Solyc06g065440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067092	Potato	nucleus	91.74	74.36
Solyc11g017140.1.1	Tomato	nucleus	74.07	53.61
CDY12041	Canola	nucleus	54.99	47.19
Bra040971.1-P	Field mustard	nucleus	56.98	46.95
CDY03148	Canola	nucleus	57.55	46.87
VIT_18s0072g00840.t01	Wine grape	nucleus	67.52	44.97
GSMUA_Achr5P01170_001	Banana	nucleus	50.14	44.78
KRG91822	Soybean	nucleus, plastid	64.67	44.6
AT1G34370.1	Thale cress	nucleus	62.96	44.29
CDY46467	Canola	nucleus	61.54	44.26
Bra036750.1-P	Field mustard	nucleus	61.25	43.79
KRH34957	Soybean	nucleus, plastid	63.25	43.79
CDX91774	Canola	nucleus	61.54	43.55
KRH08551	Soybean	nucleus, plastid	61.25	41.27
GSMUA_Achr6P18840_001	Banana	nucleus	48.43	41.16
Os01t0871200-03	Rice	nucleus	58.97	39.66
KXG33778	Sorghum	nucleus	56.98	38.54
Zm00001d012260_P001	Maize	nucleus	56.98	38.54
TraesCS3A01G381900.1	Wheat	nucleus	56.7	38.42
TraesCS3D01G375000.1	Wheat	nucleus	56.7	38.27
TraesCS3B01G414500.1	Wheat	nucleus	56.7	38.27
Zm00001d042686_P001	Maize	nucleus	55.56	37.64
Solyc04g056320.1.1	Tomato	nucleus	36.18	34.05
Solyc11g066420.1.1	Tomato	nucleus, plastid	34.76	31.77
Solyc11g062060.1.1	Tomato	nucleus	18.23	24.52
Solyc04g074320.1.1	Tomato	nucleus	18.8	24.18
Solyc01g087050.2.1	Tomato	nucleus	18.52	21.81
Solyc05g009770.1.1	Tomato	nucleus	17.38	21.33
Solyc03g059270.2.1	Tomato	nucleus	15.1	15.5
Solyc06g074360.2.1	Tomato	nucleus	7.69	12.8

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010044
GO:GO:0010447	InterPro:IPR013087	UniProt:K4C7H3	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF71	SMART:SM00355	SUPFAM:SSF57667	EnsemblPlantsGene:Solyc06g065440.1	EnsemblPlants:Solyc06g065440.1.1	UniParc:UPI000276576D
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:40847466..40848521

Molecular Weight (calculated)

39647.4 Da

IEP (calculated)

8.112

GRAVY (calculated)

-0.643

Length

351 amino acids

Sequence
(BLAST)

001: MEQQANQSNE NHDFAGLQEW DPRAMLKSMS FLEQKIHQLR ELVRIIVDHR SLAGIQGSDL SIQQQQLITA DLTSIIIQLI STAGSLLPTV KHQANPPTKR
101: LEQFGGASVP SETGTNIGAL TCNGYVPKAK DQLSHVDQMG DCFVDEHEAK DEDEPHEEEN LPPGSYEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH
201: MRGHGDEYKT SAALIKPQKD SSSGTTLIKR YSCPCIGCKR NKEHKKFQPL KTILCVKNHY RRTHCEKRYA CSRCNLKKFS VIADLRTHEK HCGKDKWLCS
301: CGTTFSRKDK LFGHISLFQG HTPAIPLDET KGFAQTSNQG QPMMQLQRLE I

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.