Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46467 | Canola | nucleus | 96.98 | 98.57 |
| Bra036750.1-P | Field mustard | nucleus | 96.77 | 97.76 |
| AT1G34370.1 | Thale cress | nucleus | 84.48 | 83.97 |
| CDY03148 | Canola | nucleus | 72.38 | 83.29 |
| CDY12041 | Canola | nucleus | 66.73 | 80.93 |
| Solyc06g065440.1.1 | Tomato | cytosol | 43.55 | 61.54 |
| VIT_18s0072g00840.t01 | Wine grape | nucleus | 62.5 | 58.82 |
| PGSC0003DMT400067092 | Potato | nucleus | 48.19 | 55.2 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 43.15 | 54.45 |
| Solyc11g017140.1.1 | Tomato | nucleus | 53.02 | 54.23 |
| KRH08551 | Soybean | nucleus, plastid | 56.45 | 53.74 |
| PGSC0003DMT400023881 | Potato | nucleus | 54.44 | 52.63 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 42.94 | 51.57 |
| KXG33778 | Sorghum | nucleus | 48.99 | 46.82 |
| Zm00001d012260_P001 | Maize | nucleus | 48.79 | 46.63 |
| Zm00001d042686_P001 | Maize | nucleus | 48.19 | 46.14 |
| Os01t0871200-03 | Rice | nucleus | 48.19 | 45.79 |
| TraesCS3A01G381900.1 | Wheat | nucleus | 47.18 | 45.17 |
| TraesCS3D01G375000.1 | Wheat | nucleus | 47.18 | 45.0 |
| TraesCS3B01G414500.1 | Wheat | nucleus | 46.98 | 44.81 |
| CDY09179 | Canola | nucleus | 24.19 | 37.04 |
| CDY26965 | Canola | nucleus | 25.0 | 33.88 |
| CDY69109 | Canola | nucleus | 25.2 | 33.6 |
| CDX74505 | Canola | nucleus | 25.0 | 32.98 |
| CDX98183 | Canola | nucleus | 25.0 | 32.98 |
| CDY31715 | Canola | nucleus | 25.0 | 32.98 |
| CDY26966 | Canola | nucleus | 24.8 | 32.71 |
| CDY09178 | Canola | nucleus | 23.59 | 31.71 |
| CDY57608 | Canola | nucleus | 14.52 | 30.0 |
| CDX67704 | Canola | nucleus | 14.52 | 29.27 |
| CDY12025 | Canola | nucleus | 13.71 | 23.69 |
| CDY06390 | Canola | nucleus | 15.93 | 23.65 |
| CDY35565 | Canola | nucleus | 16.13 | 23.6 |
| CDY29624 | Canola | nucleus | 15.93 | 23.24 |
| CDX93575 | Canola | nucleus | 15.73 | 23.15 |
| CDY22834 | Canola | nucleus, plastid | 15.73 | 23.08 |
| CDY25224 | Canola | nucleus | 15.73 | 23.08 |
| CDX95075 | Canola | nucleus | 15.73 | 23.08 |
| CDY19385 | Canola | nucleus | 13.91 | 22.7 |
| CDY03134 | Canola | nucleus | 13.1 | 22.65 |
| CDX97995 | Canola | nucleus | 13.91 | 22.4 |
| CDY27556 | Canola | nucleus | 15.73 | 21.79 |
| CDY57920 | Canola | nucleus | 15.52 | 21.45 |
| CDY26642 | Canola | nucleus | 12.7 | 21.28 |
| CDY06308 | Canola | nucleus | 14.31 | 21.07 |
| CDY22690 | Canola | nucleus | 14.31 | 21.07 |
| CDX72006 | Canola | nucleus | 15.73 | 20.91 |
| CDY06083 | Canola | nucleus | 15.73 | 20.86 |
| CDX88959 | Canola | nucleus | 14.92 | 20.33 |
Protein Annotations
| EnsemblPlants:CDX91774 | EnsemblPlantsGene:GSBRNA2T00153328001 | Gene3D:3.30.160.60 | GO:A0A078DTF2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF71 |
| PFscan:PS50157 | ProteinID:CDX91774 | ProteinID:CDX91774.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EBE434 | MapMan:15.5.15 | : | : | : |
Description
BnaC08g06930D
Coordinates
chrLK031869:-:1143733..1146061
Molecular Weight (calculated)
55535.3 Da
IEP (calculated)
6.388
GRAVY (calculated)
-0.658
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: METEDDLCKN NWGGASSSSS SKRREQVCFT SQHKWEDASI LDYEMGMEEE PAFQENSNNN NGGQVNVDFL QGVRAQAWDP RTMLSNLSFM EEKIHELQDL
101: VHLMVRRNGQ LQGRQEQLVA HQQQLITTDL TSIIIQLIST AGSLLPSVKH HNMSTAPGPF TGSALFPYPR EANNLASQTL NNNTCEFDLP KPIVVEERES
201: HVVEEHEMKD EDDVEEGENL LPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPNKEA APGSEPMLIK RYSCPFPGCK
301: RNKDHKKFQP LKTILCVKNH YKRTHCDKSF TCSRCHTKKF SVIADLKTHE KHCGKNKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPLEE TKPSAQRGSS
401: ACENSNNNNN TGMVGFNLGS ATNAIEEVAQ PGFMDGKIRF EDSFSPLSFD TCNFGGFHEF PRPMFDDSES SFQMLISSAC GFSPRNGGES VSNTSL
101: VHLMVRRNGQ LQGRQEQLVA HQQQLITTDL TSIIIQLIST AGSLLPSVKH HNMSTAPGPF TGSALFPYPR EANNLASQTL NNNTCEFDLP KPIVVEERES
201: HVVEEHEMKD EDDVEEGENL LPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP AALAKPNKEA APGSEPMLIK RYSCPFPGCK
301: RNKDHKKFQP LKTILCVKNH YKRTHCDKSF TCSRCHTKKF SVIADLKTHE KHCGKNKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPLEE TKPSAQRGSS
401: ACENSNNNNN TGMVGFNLGS ATNAIEEVAQ PGFMDGKIRF EDSFSPLSFD TCNFGGFHEF PRPMFDDSES SFQMLISSAC GFSPRNGGES VSNTSL
001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
Arabidopsis Description
STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.