Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031239.1-P | Field mustard | nucleus | 92.22 | 85.79 |
| CDY27556 | Canola | nucleus | 81.74 | 76.26 |
| CDY57920 | Canola | nucleus | 81.44 | 75.77 |
| CDY29624 | Canola | nucleus | 70.06 | 68.82 |
| CDY22834 | Canola | nucleus, plastid | 69.46 | 68.64 |
| CDY35565 | Canola | nucleus | 68.86 | 67.85 |
| CDY25224 | Canola | nucleus | 67.96 | 67.16 |
| CDY57608 | Canola | nucleus | 45.51 | 63.33 |
| AT3G20880.1 | Thale cress | nucleus | 77.54 | 62.86 |
| CDX67704 | Canola | nucleus | 45.81 | 62.2 |
| Solyc11g062060.1.1 | Tomato | nucleus | 47.6 | 60.92 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 54.19 | 58.2 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 53.59 | 55.42 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 55.39 | 55.39 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 51.5 | 53.92 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 48.2 | 53.67 |
| PGSC0003DMT400035408 | Potato | nucleus | 55.39 | 53.31 |
| CDX88959 | Canola | nucleus | 58.08 | 53.3 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 51.2 | 53.11 |
| CDX72006 | Canola | nucleus | 59.28 | 53.08 |
| GSMUA_AchrUn_... | Banana | plastid | 51.5 | 52.6 |
| CDY06083 | Canola | nucleus | 58.68 | 52.41 |
| KRH10191 | Soybean | nucleus, plastid | 53.59 | 51.88 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.4 | 50.87 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 51.8 | 50.73 |
| KRH23146 | Soybean | nucleus, plastid | 52.69 | 50.29 |
| KRH24697 | Soybean | nucleus, plastid | 50.0 | 48.97 |
| KRH29701 | Soybean | nucleus | 50.0 | 48.97 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 53.59 | 48.64 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 53.59 | 48.38 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 53.29 | 48.11 |
| CDY19385 | Canola | nucleus | 42.81 | 47.04 |
| CDY12025 | Canola | nucleus | 40.12 | 46.69 |
| CDX97995 | Canola | nucleus | 42.81 | 46.43 |
| CDY03134 | Canola | nucleus | 39.82 | 46.34 |
| Zm00001d036812_P001 | Maize | nucleus | 52.99 | 45.5 |
| Zm00001d046774_P001 | Maize | nucleus | 52.69 | 44.22 |
| EER88644 | Sorghum | nucleus, plastid | 53.29 | 44.06 |
| CDX93575 | Canola | nucleus | 44.31 | 43.92 |
| CDX95075 | Canola | nucleus | 44.01 | 43.49 |
| CDY26642 | Canola | nucleus | 38.32 | 43.24 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 54.49 | 40.9 |
| CDY22690 | Canola | nucleus | 40.42 | 40.06 |
| CDY06308 | Canola | nucleus | 40.42 | 40.06 |
| CDY09179 | Canola | nucleus | 21.26 | 21.91 |
| CDY26966 | Canola | nucleus | 23.05 | 20.48 |
| CDY26965 | Canola | nucleus | 22.16 | 20.22 |
| CDY69109 | Canola | nucleus | 22.46 | 20.16 |
| CDX98183 | Canola | nucleus | 22.46 | 19.95 |
| CDY31715 | Canola | nucleus | 22.46 | 19.95 |
| CDX74505 | Canola | nucleus | 22.46 | 19.95 |
| CDY12041 | Canola | nucleus | 23.35 | 19.07 |
| CDY09178 | Canola | nucleus | 20.96 | 18.97 |
| CDY03148 | Canola | nucleus | 23.35 | 18.1 |
| CDY46467 | Canola | nucleus | 23.35 | 15.98 |
| CDX91774 | Canola | nucleus | 23.65 | 15.93 |
Protein Annotations
| EnsemblPlants:CDY06390 | EnsemblPlantsGene:GSBRNA2T00122356001 | Gene3D:3.30.160.60 | GO:A0A078EWE6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFscan:PS50157 | ProteinID:CDY06390 | ProteinID:CDY06390.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EF388B | MapMan:15.5.15 | : | : | : | : |
Description
BnaC05g31400D
Coordinates
chrLK031969:-:271325..275431
Molecular Weight (calculated)
37794.5 Da
IEP (calculated)
7.144
GRAVY (calculated)
-0.635
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPACIFNN GIVDGYDYSF NYSTSLSHIY NSNGSFYYPH NTTDINPNST LPESPPLREA LPLLSLSPIH KQQEDIVPQH EYCFMETTEN SSNSNFLNHN
101: LDQCQESTHH YDVTVDLHLG LPNPGGDAIA AAAMSSLILP TKSIIKIVIN IMEGSHNHYW IPTPSQILMG PTQFSCPLCY KTFNRYNNMQ MHMWGHGSEY
201: RKGPESLRGT QPTGMLKLPC YCCAPGCKNN IEHPRARPLK DFRTLQTHYK RKHGARPFAC RRCGKAFAVK GDWRTHEKNC GRLWYCSCGS DFKHKRSLKD
301: HVKAFGNGHV PCFGIDCFGD HEDEEAASDV EQQE
101: LDQCQESTHH YDVTVDLHLG LPNPGGDAIA AAAMSSLILP TKSIIKIVIN IMEGSHNHYW IPTPSQILMG PTQFSCPLCY KTFNRYNNMQ MHMWGHGSEY
201: RKGPESLRGT QPTGMLKLPC YCCAPGCKNN IEHPRARPLK DFRTLQTHYK RKHGARPFAC RRCGKAFAVK GDWRTHEKNC GRLWYCSCGS DFKHKRSLKD
301: HVKAFGNGHV PCFGIDCFGD HEDEEAASDV EQQE
001: MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC LLLLFFSLSS LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
Arabidopsis Description
WIP4Zinc finger protein WIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W030]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.