Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031239.1-P | Field mustard | nucleus | 69.9 | 80.22 |
| CDY27556 | Canola | nucleus | 69.66 | 80.17 |
| CDY57920 | Canola | nucleus | 69.66 | 79.94 |
| Bra023918.1-P | Field mustard | nucleus | 69.42 | 79.67 |
| CDY06390 | Canola | nucleus | 62.86 | 77.54 |
| AT1G51220.1 | Thale cress | nucleus | 58.98 | 72.11 |
| Solyc11g062060.1.1 | Tomato | nucleus | 39.08 | 61.69 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 42.96 | 56.91 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 45.15 | 55.69 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 43.45 | 55.42 |
| PGSC0003DMT400035408 | Potato | nucleus | 45.63 | 54.18 |
| GSMUA_AchrUn_... | Banana | plastid | 42.96 | 54.13 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 41.5 | 53.6 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 38.59 | 53.0 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 41.26 | 52.8 |
| AT3G57670.1 | Thale cress | nucleus | 48.3 | 51.96 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 42.72 | 51.61 |
| KRH10191 | Soybean | nucleus, plastid | 43.2 | 51.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.23 | 50.58 |
| KRH23146 | Soybean | nucleus, plastid | 41.99 | 49.43 |
| KRH24697 | Soybean | nucleus, plastid | 40.53 | 48.97 |
| KRH29701 | Soybean | nucleus | 40.53 | 48.97 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 43.45 | 48.64 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 43.45 | 48.38 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 43.2 | 48.11 |
| AT1G13290.1 | Thale cress | nucleus | 34.47 | 47.02 |
| AT1G34790.1 | Thale cress | nucleus | 34.47 | 46.86 |
| Zm00001d036812_P001 | Maize | nucleus | 42.96 | 45.5 |
| EER88644 | Sorghum | nucleus, plastid | 43.93 | 44.8 |
| Zm00001d046774_P001 | Maize | nucleus | 43.2 | 44.72 |
| AT1G08290.1 | Thale cress | nucleus | 34.22 | 41.84 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 45.15 | 41.8 |
| AT5G22890.1 | Thale cress | nucleus | 17.23 | 19.03 |
| AT1G34370.1 | Thale cress | nucleus | 17.96 | 14.83 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:821637 | ProteinID:AEE76435.1 | EMBL:AJ311811 | ArrayExpress:AT3G20880 | EnsemblPlantsGene:AT3G20880 |
| RefSeq:AT3G20880 | TAIR:AT3G20880 | RefSeq:AT3G20880-TAIR-G | EnsemblPlants:AT3G20880.1 | TAIR:AT3G20880.1 | Unigene:At.38162 |
| ProteinID:BAB02496.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR013087 |
| RefSeq:NP_188724.2 | PO:PO:0003021 | PO:PO:0007131 | PO:PO:0020149 | ScanProsite:PS00028 | PFscan:PS50157 |
| PANTHER:PTHR10593 | PANTHER:PTHR10593:SF61 | UniProt:Q8W030 | SUPFAM:SSF57667 | UniParc:UPI00000A8140 | Symbol:WIP4 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
WIP4Zinc finger protein WIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W030]
Coordinates
chr3:-:7313538..7315883
Molecular Weight (calculated)
47157.3 Da
IEP (calculated)
6.993
GRAVY (calculated)
-0.642
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC LLLLFFSLSS LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.