Factsheet for AT1G13290.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019822.1-P	Field mustard	nucleus	86.42	84.74
CDX97995	Canola	nucleus	86.42	84.74
CDY19385	Canola	nucleus	85.1	84.54
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	38.08	75.16
CDY26642	Canola	nucleus	70.53	71.96
VIT_01s0011g03100.t01	Wine grape	nucleus	57.28	62.91
KRH34760	Soybean	nucleus	53.97	59.71
GSMUA_Achr6P21380_001	Banana	nucleus	46.69	59.49
Solyc05g009770.1.1	Tomato	nucleus	55.96	59.09
KRG92027	Soybean	nucleus	52.65	58.03
KRH75477	Soybean	nucleus	59.6	54.22
KRH70598	Soybean	nucleus	59.27	53.59
GSMUA_Achr6P01410_001	Banana	nucleus	49.01	52.67
TraesCS5B01G177600.1	Wheat	nucleus, plastid	50.33	48.1
AT1G34790.1	Thale cress	nucleus	45.36	45.21
TraesCS5D01G184400.1	Wheat	nucleus	51.32	43.66
TraesCS5A01G179800.1	Wheat	nucleus	50.99	43.38
AT1G51220.1	Thale cress	nucleus	48.01	43.03
AT3G57670.1	Thale cress	nucleus	52.65	41.51
EER96535	Sorghum	nucleus	49.67	40.54
AT1G08290.1	Thale cress	nucleus	45.03	40.36
Zm00001d020037_P001	Maize	nucleus	50.0	40.16
Zm00001d005566_P001	Maize	nucleus	50.33	40.11
Os09t0307400-00	Rice	nucleus	49.34	37.82
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	52.32	36.66
AT3G20880.1	Thale cress	nucleus	47.02	34.47
AT5G22890.1	Thale cress	nucleus	20.86	16.89
AT1G34370.1	Thale cress	nucleus	21.19	12.83

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:837889	ProteinID:AAG09553.1	ProteinID:AEE28995.1	EMBL:AJ311809
ArrayExpress:AT1G13290	EnsemblPlantsGene:AT1G13290	RefSeq:AT1G13290	TAIR:AT1G13290	RefSeq:AT1G13290-TAIR-G	EnsemblPlants:AT1G13290.1
TAIR:AT1G13290.1	Unigene:At.42038	Symbol:DOT5	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009987	GO:GO:0010087
GO:GO:0010305	GO:GO:0010588	GO:GO:0046872	GO:GO:0048364	GO:GO:0048367	InterPro:IPR013087
RefSeq:NP_172787.1	PO:PO:0000037	PO:PO:0001078	PO:PO:0001081	PO:PO:0004507	PO:PO:0007611
PO:PO:0007616	PO:PO:0009009	PO:PO:0009010	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009052	PO:PO:0025022	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF52
UniProt:Q9FX68	SUPFAM:SSF57667	UniParc:UPI000009D570	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]

Coordinates

chr1:-:4550153..4551620

Molecular Weight (calculated)

34348.5 Da

IEP (calculated)

6.938

GRAVY (calculated)

-1.083

Length

302 amino acids

Sequence
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.