Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96535 | Sorghum | nucleus | 89.36 | 90.81 |
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 65.69 | 78.16 |
| TraesCS5D01G184400.1 | Wheat | nucleus | 73.14 | 77.46 |
| TraesCS5A01G179800.1 | Wheat | nucleus | 72.34 | 76.62 |
| Zm00001d005566_P001 | Maize | nucleus | 74.73 | 74.14 |
| PGSC0003DMT400096573 | Potato | cytosol, mitochondrion, nucleus, peroxisome | 28.46 | 69.93 |
| Os09t0307400-00 | Rice | nucleus | 68.88 | 65.74 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 47.07 | 62.99 |
| VIT_01s0011g03100.t01 | Wine grape | nucleus | 42.29 | 57.82 |
| KRH34760 | Soybean | nucleus | 39.1 | 53.85 |
| Solyc05g009770.1.1 | Tomato | nucleus | 40.69 | 53.5 |
| KRG92027 | Soybean | nucleus | 38.3 | 52.55 |
| AT1G13290.1 | Thale cress | nucleus | 40.16 | 50.0 |
| KRH75477 | Soybean | nucleus | 43.62 | 49.4 |
| Bra019822.1-P | Field mustard | nucleus | 39.89 | 48.7 |
| CDX97995 | Canola | nucleus | 39.89 | 48.7 |
| CDY19385 | Canola | nucleus | 39.36 | 48.68 |
| KRH70598 | Soybean | nucleus | 43.09 | 48.5 |
| CDY26642 | Canola | nucleus | 36.7 | 46.62 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 51.33 | 44.78 |
| Zm00001d036812_P001 | Maize | nucleus | 37.77 | 36.5 |
| Zm00001d046774_P001 | Maize | nucleus | 36.7 | 34.67 |
| Zm00001d052883_P001 | Maize | nucleus | 36.44 | 33.01 |
| Zm00001d010131_P001 | Maize | nucleus, plastid | 34.57 | 32.99 |
| Zm00001d038297_P001 | Maize | nucleus | 34.31 | 32.91 |
| Zm00001d031416_P001 | Maize | nucleus | 36.7 | 32.62 |
| Zm00001d020923_P001 | Maize | nucleus | 37.5 | 32.12 |
| Zm00001d042781_P001 | Maize | nucleus | 34.31 | 31.93 |
| Zm00001d034783_P001 | Maize | nucleus | 17.55 | 18.03 |
| Zm00001d016911_P001 | Maize | nucleus | 19.15 | 17.22 |
| Zm00001d031895_P001 | Maize | nucleus | 18.62 | 16.71 |
| Zm00001d023558_P001 | Maize | nucleus | 19.68 | 15.85 |
| Zm00001d012260_P001 | Maize | nucleus | 19.68 | 14.26 |
| Zm00001d042686_P001 | Maize | nucleus | 19.41 | 14.09 |
Protein Annotations
| EMBL:EU967976 | EnsemblPlants:Zm00001d020037_P001 | EnsemblPlants:Zm00001d020037_T001 | EnsemblPlantsGene:Zm00001d020037 | EntrezGene:100284341 | Gene3D:3.30.160.60 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| PANTHER:PTHR10593 | PANTHER:PTHR10593:SF52 | PFscan:PS50157 | ProteinID:ONM54144.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000182DAA2 | UniProt:B6TSL1 | MapMan:15.5.15 | : |
Description
Zinc finger%2C C2H2 type family protein
Coordinates
chr7:+:87653786..87655349
Molecular Weight (calculated)
40479.8 Da
IEP (calculated)
7.297
GRAVY (calculated)
-0.597
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSYRAMHPY THHSYQHHTA AVAPTKHGHG HGHGHGHGDE EDDQSMLLLS LWPPGHHHGN AAASSACSSP PICASATTTS MAAAASSPAS YPWLTHQSLY
101: NNAGCGGGSS SSSHSSFLFQ EHQQEPGVSI SLSIAPPCSN NAASSCGGGG FAAPPAAPST VTTTVTPGGG QVPRQYWIPS AAEILVGSTQ FSCAVCNKTF
201: NRFNNMQMHM WGHGSQYRKG SESLRGAITV GTAPPASLMR LPCYCCAEGC RNNIEHPRAR PLKDFRTLQT HYRRKHGARP YACRRCGKRF AVRGDWRTHE
301: KNCGKLWFCV CGSDFKHKRS LKDHVRSFGG GHAPHLVESV AVEDEEEEDD DHDDDDLQTF DDNGGAGADP SDMVVI
101: NNAGCGGGSS SSSHSSFLFQ EHQQEPGVSI SLSIAPPCSN NAASSCGGGG FAAPPAAPST VTTTVTPGGG QVPRQYWIPS AAEILVGSTQ FSCAVCNKTF
201: NRFNNMQMHM WGHGSQYRKG SESLRGAITV GTAPPASLMR LPCYCCAEGC RNNIEHPRAR PLKDFRTLQT HYRRKHGARP YACRRCGKRF AVRGDWRTHE
301: KNCGKLWFCV CGSDFKHKRS LKDHVRSFGG GHAPHLVESV AVEDEEEEDD DHDDDDLQTF DDNGGAGADP SDMVVI
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.