Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 77.74 | 72.73 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 67.08 | 71.33 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 66.14 | 67.85 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 67.08 | 66.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 70.53 | 65.41 |
| Solyc11g062060.1.1 | Tomato | nucleus | 52.04 | 63.6 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 63.64 | 63.04 |
| GSMUA_AchrUn_... | Banana | plastid | 63.32 | 61.77 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 65.52 | 61.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.7 | 61.16 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 60.81 | 58.08 |
| GSMUA_Achr11P... | Banana | nucleus | 40.44 | 57.59 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 64.26 | 56.16 |
| KRH10191 | Soybean | nucleus, plastid | 58.62 | 54.2 |
| PGSC0003DMT400035408 | Potato | nucleus | 58.62 | 53.89 |
| KRH23146 | Soybean | nucleus, plastid | 58.62 | 53.43 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 59.56 | 52.63 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 50.78 | 52.26 |
| KRH29701 | Soybean | nucleus | 55.49 | 51.91 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 38.56 | 51.9 |
| Bra030450.1-P | Field mustard | nucleus | 55.17 | 51.76 |
| AT1G51220.1 | Thale cress | nucleus | 54.55 | 51.63 |
| CDY35565 | Canola | nucleus | 54.86 | 51.62 |
| KRH24697 | Soybean | nucleus, plastid | 55.17 | 51.61 |
| CDY06390 | Canola | nucleus | 53.92 | 51.5 |
| CDY22834 | Canola | nucleus, plastid | 54.23 | 51.18 |
| CDY29624 | Canola | nucleus | 54.55 | 51.18 |
| CDY25224 | Canola | nucleus | 53.92 | 50.89 |
| Bra018902.1-P | Field mustard | plastid | 53.6 | 50.74 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 42.95 | 49.1 |
| Bra023918.1-P | Field mustard | nucleus | 53.6 | 47.63 |
| CDY57920 | Canola | nucleus | 53.6 | 47.63 |
| Bra031239.1-P | Field mustard | nucleus | 53.29 | 47.35 |
| CDY27556 | Canola | nucleus | 52.66 | 46.93 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 41.07 | 46.62 |
| AT3G20880.1 | Thale cress | nucleus | 53.6 | 41.5 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 43.26 | 32.02 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 19.44 | 22.06 |
| GSMUA_Achr11P... | Banana | nucleus | 20.38 | 19.12 |
| GSMUA_Achr10P... | Banana | nucleus | 22.88 | 18.34 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 21.94 | 17.81 |
| GSMUA_Achr10P... | Banana | nucleus | 19.12 | 17.38 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 21.32 | 16.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P03470_001 | EnsemblPlants:GSMUA_Achr6T03470_001 | EnsemblPlantsGene:GSMUA_Achr6G03470_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000295258D |
| UniProt:M0T3U5 | MapMan:15.5.15 | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G03470_001]
Coordinates
chr6:-:2384036..2385630
Molecular Weight (calculated)
35914.4 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.715
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPYADPFK AFRREYPFSC NPFSEFCHGG TNTCLPPQTL TPPVREALPL LSLSPTRHQE VENSSSCSAV NEGGKVKAAV DTDGEADAVT VSLHIGLPSP
101: GAVDLTPRFS STPEDTRRIN KGQYWIPTPT QILIGPTQFS CPVCCKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCPNNIDHPR
201: SKPLKDFRTL QTHYKRRHGI KPFVCRKCSK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKSF GSGHAAYGID CFQEAAEEEE EEEEETSSEI
301: EQDGFQSYKG RKHGFLGRR
101: GAVDLTPRFS STPEDTRRIN KGQYWIPTPT QILIGPTQFS CPVCCKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCPNNIDHPR
201: SKPLKDFRTL QTHYKRRHGI KPFVCRKCSK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKSF GSGHAAYGID CFQEAAEEEE EEEEETSSEI
301: EQDGFQSYKG RKHGFLGRR
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.