CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24697	Soybean	nucleus, plastid	95.6	95.6
KRH25207	Soybean	nucleus	30.21	69.59
Solyc11g062060.1.1	Tomato	nucleus	50.73	66.28
KRH10191	Soybean	nucleus, plastid	64.81	64.06
KRH23146	Soybean	nucleus, plastid	65.1	63.43
VIT_06s0004g01870.t01	Wine grape	nucleus	59.82	61.08
GSMUA_Achr9P12600_001	Banana	nucleus	53.96	59.16
KRH18924	Soybean	nucleus	40.47	58.23
GSMUA_Achr3P03850_001	Banana	plastid	55.13	58.2
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	50.44	57.33
GSMUA_AchrUn_...	Banana	plastid	54.84	57.19
GSMUA_Achr4P01560_001	Banana	nucleus	52.79	55.9
GSMUA_Achr6P03470_001	Banana	nucleus	51.91	55.49
KRH16750	Soybean	nucleus	40.47	55.42
PGSC0003DMT400035408	Potato	nucleus	56.3	55.33
KRG95308	Soybean	nucleus, plastid	55.43	54.15
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	53.96	53.96
KRH66988	Soybean	nucleus	55.72	53.07
KRH34760	Soybean	nucleus	41.94	52.38
KRG92027	Soybean	nucleus	41.94	52.19
GSMUA_AchrUn_...	Banana	nucleus	52.49	52.03
KRH71956	Soybean	nucleus, plastid	56.6	52.02
AT1G51220.1	Thale cress	nucleus	51.32	51.93
Bra030450.1-P	Field mustard	nucleus	50.44	50.59
KRH27491	Soybean	nucleus, plastid	52.2	50.57
CDY35565	Canola	nucleus	50.15	50.44
CDY25224	Canola	nucleus	49.85	50.3
CDY22834	Canola	nucleus, plastid	49.85	50.3
CDY29624	Canola	nucleus	50.15	50.29
KRH33045	Soybean	nucleus, plastid	56.6	50.0
KRH13927	Soybean	nucleus, plastid	50.15	50.0
CDY06390	Canola	nucleus	48.97	50.0
Bra018902.1-P	Field mustard	plastid	49.27	49.85
TraesCS7A01G404400.1	Wheat	nucleus	53.67	49.73
KRH43510	Soybean	nucleus, plastid	50.44	49.71
TraesCS7B01G304000.1	Wheat	nucleus	53.67	49.46
TraesCS7D01G397800.1	Wheat	nucleus	53.67	49.46
KRH20837	Soybean	nucleus, plastid	51.32	49.02
Bra023918.1-P	Field mustard	nucleus	51.03	48.47
KRH22690	Soybean	nucleus	45.16	48.28
CDY57920	Canola	nucleus	50.73	48.19
Zm00001d036812_P001	Maize	nucleus	54.84	48.07
CDY27556	Canola	nucleus	50.15	47.77
KRH26622	Soybean	nucleus	44.87	47.66
Zm00001d046774_P001	Maize	nucleus	54.84	46.98
EER88644	Sorghum	nucleus, plastid	55.43	46.78
KRH30442	Soybean	nucleus	45.16	46.67
Bra031239.1-P	Field mustard	nucleus	48.97	46.52
KRH70598	Soybean	nucleus	44.87	45.81
KRH75477	Soybean	nucleus	43.11	44.28
Os06t0612300-01	Rice	endoplasmic reticulum, vacuole	54.25	41.57
AT3G20880.1	Thale cress	nucleus	48.97	40.53
KRH25208	Soybean	nucleus, plastid	15.54	30.29
KRH22822	Soybean	plastid	19.06	23.38
KRG97571	Soybean	nucleus, plastid	19.65	19.82
KRH25115	Soybean	nucleus	21.99	18.94
KRH31302	Soybean	nucleus, plastid	19.94	18.68
KRH43171	Soybean	nucleus, plastid	17.3	18.55
KRH59322	Soybean	nucleus	17.6	18.35
KRH26538	Soybean	nucleus, plastid	21.99	18.29
KRH30553	Soybean	nucleus, plastid	21.7	18.05
KRH34957	Soybean	nucleus, plastid	23.75	15.98
KRG91822	Soybean	nucleus, plastid	23.75	15.91
KRH08551	Soybean	nucleus, plastid	23.17	15.16

Protein Annotations

EMBL:ACUP02006816	EnsemblPlants:KRH29701	EnsemblPlantsGene:GLYMA_11G132600	EntrezGene:100783143	Gene3D:3.30.160.60	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593
PANTHER:PTHR10593:SF61	PFscan:PS50157	ProteinID:KRH29701	ProteinID:KRH29701.1	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF57667	UniParc:UPI000233C701	UniProt:I1LJV3	MapMan:15.5.15	:	:

Description

hypothetical protein

Coordinates

chr11:-:10149946..10152819

Molecular Weight (calculated)

38512.0 Da

IEP (calculated)

7.308

GRAVY (calculated)

-0.758

Length

341 amino acids

Sequence
(BLAST)

001: MTNSYTSNDL NFWLDLNSPC LLSSPSPSPS INPPFYFPSN YHNNNYTSVI SSTRHQFQPS PPPEGKALPL LHPRHEVEEE DLESSFSAME VDKKKKELSS
101: SSSCLDEEDA AVTVALHLGL PSTSDLASSS LYSSTEASSD KEEEEEEVVL TDSSGLLLSN RINRGQYWIP TSSQILIGPT QFPCPLCFKT FNRYNNMQMH
201: MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAPGCKNNID HPRAKPLKDF RTLQTHYKRK HGTKPFVCRK CCKAFAVRGD WRTHEKNCGK RWYCSCGSDF
301: KHKRSLKDHI KAFGYGHTAC GNDRCNLDQD HDDQLVGSEI E

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.