CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036750.1-P	Field mustard	nucleus	99.8	99.19
CDX91774	Canola	nucleus	98.57	96.98
CDY03148	Canola	nucleus	73.16	82.83
AT1G34370.1	Thale cress	nucleus	84.63	82.77
CDY12041	Canola	nucleus	67.62	80.68
Solyc06g065440.1.1	Tomato	cytosol	44.26	61.54
VIT_18s0072g00840.t01	Wine grape	nucleus	63.52	58.82
PGSC0003DMT400067092	Potato	nucleus	48.98	55.2
GSMUA_Achr5P01170_001	Banana	nucleus	43.85	54.45
Solyc11g017140.1.1	Tomato	nucleus	53.69	54.02
KRH08551	Soybean	nucleus, plastid	57.38	53.74
PGSC0003DMT400023881	Potato	nucleus	55.33	52.63
GSMUA_Achr6P18840_001	Banana	nucleus	43.44	51.33
KXG33778	Sorghum	nucleus	49.59	46.63
Zm00001d012260_P001	Maize	nucleus	49.39	46.44
Zm00001d042686_P001	Maize	nucleus	48.77	45.95
Os01t0871200-03	Rice	nucleus	48.77	45.59
TraesCS3A01G381900.1	Wheat	nucleus	47.75	44.98
TraesCS3D01G375000.1	Wheat	nucleus	47.75	44.81
TraesCS3B01G414500.1	Wheat	nucleus	47.54	44.62
CDY09179	Canola	nucleus	24.59	37.04
CDY26965	Canola	nucleus	25.2	33.61
CDY69109	Canola	nucleus	25.41	33.33
CDX74505	Canola	nucleus	25.41	32.98
CDX98183	Canola	nucleus	25.41	32.98
CDY31715	Canola	nucleus	25.41	32.98
CDY26966	Canola	nucleus	25.2	32.71
CDY09178	Canola	nucleus	23.98	31.71
CDY57608	Canola	nucleus	14.75	30.0
CDX67704	Canola	nucleus	14.75	29.27
CDY12025	Canola	nucleus	13.93	23.69
CDY35565	Canola	nucleus	16.39	23.6
CDY06390	Canola	nucleus	15.98	23.35
CDY29624	Canola	nucleus	16.19	23.24
CDX93575	Canola	nucleus	15.98	23.15
CDY25224	Canola	nucleus	15.98	23.08
CDX95075	Canola	nucleus	15.98	23.08
CDY22834	Canola	nucleus, plastid	15.98	23.08
CDY19385	Canola	nucleus	14.14	22.7
CDY03134	Canola	nucleus	13.32	22.65
CDX97995	Canola	nucleus	14.14	22.4
CDY27556	Canola	nucleus	15.78	21.51
CDY26642	Canola	nucleus	12.91	21.28
CDY57920	Canola	nucleus	15.57	21.17
CDY06308	Canola	nucleus	14.55	21.07
CDY22690	Canola	nucleus	14.55	21.07
CDX72006	Canola	nucleus	15.98	20.91
CDY06083	Canola	nucleus	15.98	20.86
CDX88959	Canola	nucleus	15.16	20.33

Protein Annotations

EnsemblPlants:CDY46467	EnsemblPlantsGene:GSBRNA2T00084053001	Gene3D:3.30.160.60	GO:A0A078I8Q3	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF71
PFscan:PS50157	ProteinID:CDY46467	ProteinID:CDY46467.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI0004EF23D6	UniProt:A0A078I8Q3	MapMan:15.5.15	:	:

Description

BnaA08g06410DBnaA08g06410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8Q3]

Coordinates

chrLK032668:+:158841..161026

Molecular Weight (calculated)

54502.1 Da

IEP (calculated)

6.200

GRAVY (calculated)

-0.635

Length

488 amino acids

Sequence
(BLAST)

001: MEPEDDLCQN NWGGSSSSSS SKRREQVCFT SQHKWEDASI LDYEMGMEEE PAFQENSNNN NGGQVNVDFL QGVRAQAWDP RTMLSNLSFM EEKIHELQDL
101: VHLMVARNGQ LQGRQEQLVA QQQQLITTDL TSIIIQLIST AGSLLPSVKH HNMSTAPGPF TGSALFPYPR EANNLASQTL NNNTCEFDLP KPIVVEEEHE
201: MKDEDDVEEG ENLLPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTPAALAKPN KEAVPGSEPM LIKRYSCPFP GCKRNKDHKK
301: FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAQK GSSACENSNN
401: NNTGMVGFNL GSATNAIEEV AQPGFMDGKI RFEDSFSPLS FDTCNFGGFH EFPRPMFDDS ESSFQMLISS ACGFSPRNGG ESVSNTSL

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.