Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020224.1-P | Field mustard | nucleus | 74.38 | 80.07 |
| CDY09178 | Canola | nucleus | 80.86 | 71.0 |
| CDX98183 | Canola | nucleus | 79.63 | 68.62 |
| CDY26966 | Canola | nucleus | 79.63 | 68.62 |
| CDY31715 | Canola | nucleus | 79.63 | 68.62 |
| CDX74505 | Canola | nucleus | 79.63 | 68.62 |
| CDY26965 | Canola | nucleus | 75.62 | 66.94 |
| CDY69109 | Canola | nucleus | 76.23 | 66.4 |
| AT5G22890.1 | Thale cress | nucleus | 72.53 | 63.0 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 43.21 | 49.82 |
| KRH22822 | Soybean | plastid | 41.98 | 48.92 |
| PGSC0003DMT400001105 | Potato | nucleus | 42.9 | 43.71 |
| GSMUA_Achr11P... | Banana | nucleus | 43.52 | 41.47 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 49.69 | 41.28 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 48.46 | 40.89 |
| TraesCS1A01G060200.1 | Wheat | nucleus | 45.06 | 38.02 |
| Os08t0562300-01 | Rice | nucleus | 45.06 | 37.92 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 45.06 | 37.24 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 44.14 | 36.95 |
| Zm00001d031895_P001 | Maize | nucleus | 44.44 | 34.37 |
| OQU80698 | Sorghum | nucleus | 45.06 | 34.35 |
| Os04t0165200-01 | Rice | nucleus | 39.2 | 34.23 |
| CDY12041 | Canola | nucleus | 34.57 | 27.38 |
| CDY03148 | Canola | nucleus | 36.42 | 27.38 |
| CDY57608 | Canola | nucleus | 18.83 | 25.42 |
| CDX67704 | Canola | nucleus | 18.83 | 24.8 |
| CDY46467 | Canola | nucleus | 37.04 | 24.59 |
| CDX91774 | Canola | nucleus | 37.04 | 24.19 |
| CDY12025 | Canola | nucleus | 20.37 | 23.0 |
| CDY03134 | Canola | nucleus | 20.06 | 22.65 |
| CDY19385 | Canola | nucleus | 20.37 | 21.71 |
| CDY06390 | Canola | nucleus | 21.91 | 21.26 |
| CDY35565 | Canola | nucleus | 22.22 | 21.24 |
| CDX97995 | Canola | nucleus | 20.06 | 21.1 |
| CDY26642 | Canola | nucleus | 19.14 | 20.95 |
| CDY22834 | Canola | nucleus, plastid | 21.6 | 20.71 |
| CDY25224 | Canola | nucleus | 21.3 | 20.41 |
| CDY29624 | Canola | nucleus | 21.3 | 20.29 |
| CDX93575 | Canola | nucleus | 20.68 | 19.88 |
| CDX95075 | Canola | nucleus | 20.68 | 19.82 |
| CDX88959 | Canola | nucleus | 21.91 | 19.51 |
| CDY57920 | Canola | nucleus | 21.6 | 19.5 |
| CDX72006 | Canola | nucleus | 22.22 | 19.3 |
| CDY27556 | Canola | nucleus | 21.3 | 19.27 |
| CDY06083 | Canola | nucleus | 21.91 | 18.98 |
| CDY22690 | Canola | nucleus | 18.83 | 18.1 |
| CDY06308 | Canola | nucleus | 18.83 | 18.1 |
Protein Annotations
| EnsemblPlants:CDY09179 | EnsemblPlantsGene:GSBRNA2T00001412001 | Gene3D:3.30.160.60 | GO:A0A078F820 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF41 |
| PFscan:PS50157 | ProteinID:CDY09179 | ProteinID:CDY09179.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE6326 | UniProt:A0A078F820 | MapMan:15.5.15 | : | : |
Description
BnaA02g06050DBnaA02g06050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F820]
Coordinates
chrLK031993:-:502373..503493
Molecular Weight (calculated)
37109.3 Da
IEP (calculated)
8.501
GRAVY (calculated)
-0.614
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQEDHMNQG DHIMNNGEGS MPCFSETTIT SSNHLYPMTA ATKSSEEDHS ISLSLLLNLS TIQDKVHHIQ SLVSFFMISN NNQSSESTSS LAVANIESLV
101: QEIVTAATSM MLTCQQRHIH LITTNLDWHG TQSINPKKDQ HRFKTRPGNY EILELGADDL LAKFTHYCQI CGKGFKRDAN LRMHMRAHGD EYKTREALIS
201: PTSHDKKVEE HSLMRHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS HCPKMYMCRR CNVKHFSVLS DLRTHEKHCG DIKWVCSCGT TFSRKDKLMS
301: HVSLFVGHSP VHGPPPQQRP IITI
101: QEIVTAATSM MLTCQQRHIH LITTNLDWHG TQSINPKKDQ HRFKTRPGNY EILELGADDL LAKFTHYCQI CGKGFKRDAN LRMHMRAHGD EYKTREALIS
201: PTSHDKKVEE HSLMRHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS HCPKMYMCRR CNVKHFSVLS DLRTHEKHCG DIKWVCSCGT TFSRKDKLMS
301: HVSLFVGHSP VHGPPPQQRP IITI
001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL
Arabidopsis Description
STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.