Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037384.1-P | Field mustard | nucleus | 37.12 | 91.27 |
| CDY07174 | Canola | nucleus | 74.07 | 65.57 |
| CDX79176 | Canola | cytosol | 11.72 | 58.41 |
| CDY67475 | Canola | nucleus | 55.42 | 52.79 |
| CDX91876 | Canola | nucleus | 54.0 | 52.05 |
| AT4G01090.1 | Thale cress | nucleus | 58.97 | 46.5 |
| CDY15177 | Canola | nucleus | 44.41 | 44.88 |
| CDX90032 | Canola | nucleus | 41.92 | 42.14 |
| CDX80013 | Canola | nucleus | 30.91 | 26.17 |
| CDY42041 | Canola | cytosol | 30.02 | 26.16 |
| CDX71720 | Canola | cytosol | 31.97 | 24.32 |
| CDY11374 | Canola | cytosol | 31.62 | 24.02 |
| CDY11373 | Canola | cytosol | 30.02 | 23.06 |
| GSMUA_Achr3P25070_001 | Banana | vacuole | 27.35 | 22.25 |
| GSMUA_Achr10P... | Banana | nucleus | 28.95 | 21.7 |
| GSMUA_Achr10P... | Banana | nucleus | 30.02 | 21.56 |
| GSMUA_Achr7P14150_001 | Banana | nucleus | 28.77 | 21.37 |
| GSMUA_Achr10P... | Banana | cytosol | 28.6 | 20.75 |
| Os05t0586400-01 | Rice | nucleus | 28.24 | 20.38 |
| TraesCS7D01G371500.1 | Wheat | nucleus | 29.48 | 20.07 |
| TraesCS1B01G459600.2 | Wheat | plastid | 27.89 | 19.97 |
| Os01t0621300-01 | Rice | nucleus | 28.6 | 19.95 |
| TraesCS3D01G229400.1 | Wheat | nucleus | 28.24 | 19.95 |
| TraesCS7B01G276600.1 | Wheat | nucleus | 29.31 | 19.93 |
| TraesCS7A01G351500.1 | Wheat | nucleus | 29.13 | 19.93 |
| TraesCS3B01G253700.2 | Wheat | nucleus | 28.06 | 19.85 |
| TraesCS1D01G434200.2 | Wheat | nucleus | 27.53 | 19.82 |
| Zm00001d044191_P004 | Maize | nucleus | 27.89 | 19.77 |
| HORVU3Hr1G055550.3 | Barley | nucleus | 27.71 | 19.67 |
| KXG22639 | Sorghum | nucleus | 27.53 | 19.57 |
| Zm00001d053382_P002 | Maize | nucleus | 28.6 | 19.52 |
| KXG29961 | Sorghum | nucleus | 29.66 | 19.33 |
| TraesCS1A01G425200.2 | Wheat | nucleus | 27.0 | 19.31 |
| EES03295 | Sorghum | nucleus | 27.35 | 19.3 |
| Os06t0524300-01 | Rice | nucleus | 27.71 | 19.24 |
| HORVU0Hr1G021800.1 | Barley | nucleus | 27.71 | 19.14 |
| Zm00001d016081_P002 | Maize | nucleus | 28.95 | 19.13 |
| Os02t0258300-01 | Rice | nucleus | 28.6 | 19.12 |
| Zm00001d011373_P002 | Maize | nucleus | 27.35 | 18.99 |
| EER88427 | Sorghum | nucleus | 26.82 | 18.97 |
| Zm00001d046072_P001 | Maize | cytosol | 27.18 | 18.96 |
| Zm00001d009716_P001 | Maize | nucleus | 24.87 | 18.32 |
| TraesCS7A01G336000.1 | Wheat | nucleus | 27.71 | 18.29 |
| TraesCS7B01G247600.1 | Wheat | cytosol | 27.18 | 18.19 |
| TraesCS7D01G343700.1 | Wheat | cytosol | 27.35 | 18.14 |
| TraesCS3A01G224200.2 | Wheat | nucleus | 26.82 | 18.11 |
| HORVU1Hr1G092980.14 | Barley | plastid | 27.71 | 17.79 |
| HORVU7Hr1G082720.10 | Barley | cytosol, nucleus | 25.4 | 16.74 |
Protein Annotations
| EnsemblPlants:CDY48504 | EnsemblPlantsGene:GSBRNA2T00091203001 | InterPro:Zinc_ribbon_12 | ncoils:Coil | PANTHER:PTHR31105 | PANTHER:PTHR31105:SF3 |
| PFAM:PF11331 | ProteinID:CDY48504 | ProteinID:CDY48504.1 | SEG:seg | UniParc:UPI0004EDCF90 | UniProt:A0A078IGH8 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA09g00190DBnaA09g00190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGH8]
Coordinates
chrLK032776:-:44779..47979
Molecular Weight (calculated)
62704.6 Da
IEP (calculated)
6.618
GRAVY (calculated)
-0.860
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSRDDDDAY EAADGSRSDA GSSRTDEEKH SRLGSQRSGK SQDLSDPNYA SDTSSKNTTT TNPIEYTEQE RAELLRRLDS IKDHLLRGGS GGSVVNENQQ
101: FLRPSYYYQH PYPEPYPYPA PVHYHQDPYR RPPPVPYPPR PYPGTHYVDI GADIVDQGSF FPPTPSRYSD MPPYSPVSSH QRLYNNSPRG GGYARWPSDV
201: DSEMGGADPR GYVKKAVSVN DDARRCHPLA GGAPFIACHS CFELLCLPKR KLLAQERQQH KLQCGACSEV ISFRIVEKKL SVSIEVEDRS TVVAVEEHDF
301: PQRLSISSES LQKKEVKSVR RRAKGSKATE PAASESASLL ELFEYSNFFT KQDSVKPESL ATETEVSYNG YSNTEISEDS NGREDSNNNN NRPRSRKGSE
401: SGSTEVTTRS STDDQGKLLE VWVNGHLIPE ERVSTAEKLA GPVQAGKYWY DYRAGFWGVM GKPCLGIIPP FIEEFSHHPM PDNCGAGNTE VYVNGRELHK
501: RDLELLAGRG LPRDKNRSYI LDISGRVVDG ESGEELKSLG KLAPTVDKVK HGFGMRVPRS LAS
101: FLRPSYYYQH PYPEPYPYPA PVHYHQDPYR RPPPVPYPPR PYPGTHYVDI GADIVDQGSF FPPTPSRYSD MPPYSPVSSH QRLYNNSPRG GGYARWPSDV
201: DSEMGGADPR GYVKKAVSVN DDARRCHPLA GGAPFIACHS CFELLCLPKR KLLAQERQQH KLQCGACSEV ISFRIVEKKL SVSIEVEDRS TVVAVEEHDF
301: PQRLSISSES LQKKEVKSVR RRAKGSKATE PAASESASLL ELFEYSNFFT KQDSVKPESL ATETEVSYNG YSNTEISEDS NGREDSNNNN NRPRSRKGSE
401: SGSTEVTTRS STDDQGKLLE VWVNGHLIPE ERVSTAEKLA GPVQAGKYWY DYRAGFWGVM GKPCLGIIPP FIEEFSHHPM PDNCGAGNTE VYVNGRELHK
501: RDLELLAGRG LPRDKNRSYI LDISGRVVDG ESGEELKSLG KLAPTVDKVK HGFGMRVPRS LAS
001: MRSRGDVSEA EGTRSDAGSS RSEEETSLKE KHSNSRAGSQ RSGKSLRNDE PNYGSDSSSK NTSSSNNPIE YTEHERAELL RRLDSIKDHL LRGGGGGNNV
101: VDKPKEPDQN QPFLRPVHLH GHANHNPGPS YYHQYPEPIQ YPGPVHGMYP QAYQDPYGYQ RRPPPVPNPN WYPPGHYPNQ MARQYPGGQY VELGPDIVEP
201: HSYYPATPGR YGDLPPYSPV SSHHREEKLA TQYSDMPPYS PVSSHHRGEK LTTPYSPRVN NGSSFPSSMG TPGPRGGYAR WPSEHDSEMG GAFARGYVKK
301: AVSDTGVRRC HPLAGGAPFI ACHSCFELLY LPKKKLLSQE RLHKLQCGAC SEVISFTIVD RKLVFSSGNE ETKPVSLEVE DRNTTNTVVI EEEVSSVDFN
401: SSGRDIPRKD EEEPVQELRN HQDTITTQSV RSESQHSDDE ERSSNSSEQQ QKEVKSVRRR GKGSKAPEPA APDNASLLEL FEYSNVNRAA LAYGMAQLGY
501: EKPDKQKSFM TQDSLKPESV ATETEVSYNG YSNTEISEDS RYSNRKGSEY GSTEITTRSS TDQNEDQMKS LEVWVNGHLI PEDLVSSAEK LAGPIQAGKY
601: WYDYRAGFWG VMGKPCLGII PPFIEEFSHP MLDNCAAGNT DVFVNGRELH KRDFELLVGR GLPRDKNRSY IVDISGRILD QDSGEELHSL GKLAPTIEKV
701: KHGFGMRVPR SLAS
101: VDKPKEPDQN QPFLRPVHLH GHANHNPGPS YYHQYPEPIQ YPGPVHGMYP QAYQDPYGYQ RRPPPVPNPN WYPPGHYPNQ MARQYPGGQY VELGPDIVEP
201: HSYYPATPGR YGDLPPYSPV SSHHREEKLA TQYSDMPPYS PVSSHHRGEK LTTPYSPRVN NGSSFPSSMG TPGPRGGYAR WPSEHDSEMG GAFARGYVKK
301: AVSDTGVRRC HPLAGGAPFI ACHSCFELLY LPKKKLLSQE RLHKLQCGAC SEVISFTIVD RKLVFSSGNE ETKPVSLEVE DRNTTNTVVI EEEVSSVDFN
401: SSGRDIPRKD EEEPVQELRN HQDTITTQSV RSESQHSDDE ERSSNSSEQQ QKEVKSVRRR GKGSKAPEPA APDNASLLEL FEYSNVNRAA LAYGMAQLGY
501: EKPDKQKSFM TQDSLKPESV ATETEVSYNG YSNTEISEDS RYSNRKGSEY GSTEITTRSS TDQNEDQMKS LEVWVNGHLI PEDLVSSAEK LAGPIQAGKY
601: WYDYRAGFWG VMGKPCLGII PPFIEEFSHP MLDNCAAGNT DVFVNGRELH KRDFELLVGR GLPRDKNRSY IVDISGRILD QDSGEELHSL GKLAPTIEKV
701: KHGFGMRVPR SLAS
Arabidopsis Description
AT4G01090 protein [Source:UniProtKB/TrEMBL;Acc:Q9M155]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.