CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75900
CDX81221
CDX82382
CDX84515
CDX92112
CDX95888
CDY04768
CDY18715
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	CDY04768	AT1G22920.1	21798944
AT2G02950.1	CDY21400	AT1G22920.1	21798944
AT2G02950.1	CDY25761	AT1G22920.1	21798944
AT2G02950.1	CDX75900	AT2G18790.1	10348744
AT2G02950.1	CDX82382	AT2G18790.1	10348744
AT2G02950.1	CDX92112	AT2G18790.1	10348744
AT2G02950.1	CDX95888	AT2G18790.1	10348744
AT2G02950.1	CDX81221	AT5G64330.1	16777956
AT2G02950.1	CDX84515	AT5G64330.1	16777956
AT2G02950.1	CDY18715	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17423	Canola	plastid	82.86	82.86
CDY45189	Canola	plastid	58.33	59.32
AT2G02950.1	Thale cress	plastid	61.9	59.23
CDY03026	Canola	plastid	54.05	57.91
CDY09346	Canola	plastid	56.43	57.11
CDY62179	Canola	plastid	54.52	55.45
CDY49100	Canola	plastid	43.33	41.84
CDY39328	Canola	nucleus	40.0	40.29
CDX84038	Canola	cytosol	34.29	38.2
CDX83749	Canola	cytosol	14.05	25.76
CDY19245	Canola	nucleus	9.76	25.62
KRH70717	Soybean	nucleus	29.76	25.36
CDY19246	Canola	nucleus	6.67	25.23
KRH74851	Soybean	nucleus, plastid	29.29	24.95
KRG99090	Soybean	cytosol, nucleus, peroxisome	28.33	23.61
VIT_01s0026g02330.t01	Wine grape	nucleus	29.29	23.56
CDX83812	Canola	cytoskeleton, cytosol, nucleus	19.76	22.93
CDX96697	Canola	cytoskeleton, cytosol, nucleus	19.52	22.71
KRH45905	Soybean	nucleus	28.81	22.7
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	21.43	21.74
GSMUA_Achr10P...	Banana	nucleus	15.95	19.14
CDY26723	Canola	nucleus	1.9	9.41

Protein Annotations

EnsemblPlants:CDY60835	EnsemblPlantsGene:GSBRNA2T00030116001	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4	ProteinID:CDY60835	ProteinID:CDY60835.1
SEG:seg	UniParc:UPI0004EECFAE	UniProt:A0A078J436	MapMan:26.1.2.2.3	:	:

Description

BnaA09g53700DBnaA09g53700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J436]

Coordinates

chrLK033919:+:32900..34162

Molecular Weight (calculated)

46291.4 Da

IEP (calculated)

8.618

GRAVY (calculated)

-0.690

Length

420 amino acids

Sequence
(BLAST)

001: MVSLTSSSSS TPKISFDFTK NNNNTSLNVP VSSFSSDSSC LRSKEEAIVT TKKVIEPCKT LNSNINPKDD QEFRDENKMV KKSLEDPEIG VFGAEKYFNG
101: DMDSDQSSIV LSITNPEAER LVDDLKQSEK KSTGAPSVHS EASCNSQSML LQNKLANSCN GSVQEKKNNS GQIQKLNNNK KSFLMNLGCK CACSDGISVD
201: VDDKILVKRS SDLINIQKQE ELVQRNSLEV LGSPVEKKRV VAQKKLTLPP RESRTEEEDT TSEGSDTSSD LFEIDNLTGK PKNFLARQGS DPTFYAPSEV
301: SIEWSIVTAS AADFSIMSEC ATSPLGRNQF LQIPPRIPTK TAPHRLKPSN ASGGFLSCKS HKSVMVSGDS DRRSSMNKKK TSLAYVPRHV QVMETTKRKS
401: LETRRRISNS SPSPLLYSQY

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.