CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75900
CDX81221
CDX82382
CDX84515
CDX92112
CDX95888
CDY04768
CDY18715
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	CDY04768	AT1G22920.1	21798944
AT2G02950.1	CDY21400	AT1G22920.1	21798944
AT2G02950.1	CDY25761	AT1G22920.1	21798944
AT2G02950.1	CDX75900	AT2G18790.1	10348744
AT2G02950.1	CDX82382	AT2G18790.1	10348744
AT2G02950.1	CDX92112	AT2G18790.1	10348744
AT2G02950.1	CDX95888	AT2G18790.1	10348744
AT2G02950.1	CDX81221	AT5G64330.1	16777956
AT2G02950.1	CDX84515	AT5G64330.1	16777956
AT2G02950.1	CDY18715	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017406.1-P	Field mustard	plastid	95.95	96.18
CDY60835	Canola	plastid	82.86	82.86
CDY45189	Canola	plastid	65.48	66.59
CDY03026	Canola	plastid	61.19	65.56
CDY62179	Canola	plastid	62.38	63.44
AT2G02950.1	Thale cress	plastid	64.05	61.28
CDY09346	Canola	plastid	60.48	61.2
CDY49100	Canola	plastid	43.33	41.84
CDY39328	Canola	nucleus	39.76	40.05
CDX84038	Canola	cytosol	35.0	38.99
CDY19246	Canola	nucleus	7.14	27.03
CDY19245	Canola	nucleus	10.24	26.88
KRH74851	Soybean	nucleus, plastid	30.48	25.96
KRH70717	Soybean	nucleus	29.76	25.36
VIT_01s0026g02330.t01	Wine grape	nucleus	30.95	24.9
CDX83749	Canola	cytosol	13.33	24.45
CDX96697	Canola	cytoskeleton, cytosol, nucleus	20.71	24.1
KRG99090	Soybean	cytosol, nucleus, peroxisome	28.57	23.81
CDX83812	Canola	cytoskeleton, cytosol, nucleus	20.48	23.76
KRH45905	Soybean	nucleus	28.81	22.7
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	21.19	21.5
GSMUA_Achr10P...	Banana	nucleus	17.38	20.86
CDY26723	Canola	nucleus	2.38	11.76

Protein Annotations

EnsemblPlants:CDY17423	EnsemblPlantsGene:GSBRNA2T00095552001	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4	ProteinID:CDY17423	ProteinID:CDY17423.1
SEG:seg	UniParc:UPI0004EBE0D9	UniProt:A0A078FYK5	MapMan:26.1.2.2.3	:	:

Description

BnaC09g21140DBnaC09g21140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYK5]

Coordinates

chrLK032073:+:124495..125787

Molecular Weight (calculated)

46142.2 Da

IEP (calculated)

8.675

GRAVY (calculated)

-0.688

Length

420 amino acids

Sequence
(BLAST)

001: MVSLTSSSSS TPKISFDFTK NNSNTSLNVP VSSFSSDSSC LRSKEEAVVT TKKVIEPCKT LNSNINPKDD QEFRDENKMV KKALEDPEIG VFGAEKYFNG
101: DMDSDQSSTV LSITNPEAER LVDDLKQNEK KSTGAPSVHS EASCNSQSML LQNKLANSCN GSVQEKKNNS GQIQKVVNNK KSFLMNLGCK CACSDGISVD
201: VDDKILVKRS SDLINIQKQE ELVQRKSLEV LGSPVEKKRV LAQKKLTLPP RESRTEEEDT TSEGSDTSSD LFEIDNLTGK PKTFLARQGS DPTCYAPSEV
301: SIEWSIVTAS AADFSVMSEC ATSPLGRNQF LQIPPRIPTK TAPQRLKPSS ASGGFLSCKS HKSVMVSGDS DRRSSMNKKK TSLAYVPRHV QVMETNKRKS
401: LETRRRTSNS SPSPLLYSQY

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.