Factsheet for VIT_01s0026g02330.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g00270.t01
VIT_03s0038g04360.t01
VIT_05s0077g00940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT2G02950.1	VIT_05s0077g00940.t01	AT2G18790.1	10348744
AT2G02950.1	VIT_03s0038g00270.t01	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06040.t01	Wine grape	cytosol	33.33	42.34
KRH74851	Soybean	nucleus, plastid	37.16	39.35
KRH70717	Soybean	nucleus	36.21	38.34
KRH45905	Soybean	nucleus	36.78	36.02
KRG99090	Soybean	cytosol, nucleus, peroxisome	34.29	35.52
CDY03026	Canola	plastid	25.29	33.67
Bra024800.1-P	Field mustard	nucleus, plastid	20.31	33.33
CDY45189	Canola	plastid	25.86	32.69
CDY39328	Canola	nucleus	26.05	32.61
Bra019666.1-P	Field mustard	plastid	26.63	31.95
CDX84038	Canola	cytosol	22.99	31.83
AT2G02950.1	Thale cress	plastid	26.63	31.66
CDY49100	Canola	plastid	26.25	31.49
AT1G14280.1	Thale cress	plastid	26.25	31.0
CDY17423	Canola	plastid	24.9	30.95
Bra017406.1-P	Field mustard	plastid	24.71	30.79
CDY60835	Canola	plastid	23.56	29.29
CDY62179	Canola	plastid	22.99	29.06
CDY09346	Canola	plastid	22.8	28.67
Bra026572.1-P	Field mustard	plastid	22.61	28.43
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	21.84	27.54
CDX83749	Canola	cytosol	10.73	24.45
GSMUA_Achr10P...	Banana	nucleus	15.71	23.43

Protein Annotations

ArrayExpress:VIT_01s0026g02330	EMBL:FN596002	EnsemblPlants:VIT_01s0026g02330.t01	EnsemblPlantsGene:VIT_01s0026g02330	EntrezGene:104879773	PANTHER:PTHR33781
PANTHER:PTHR33781:SF4	ProteinID:CCB56553	ProteinID:CCB56553.1	RefSeq:XP_010652107.1	SEG:seg	UniParc:UPI0002108B22
UniProt:F6HPC5	MapMan:26.1.2.2.3	:	:	:	:

Description

No Description!

Coordinates

chr1:-:11816126..11817819

Molecular Weight (calculated)

56649.5 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.605

Length

522 amino acids

Sequence
(BLAST)

001: MAMVTLTSGC NNFSHSDNHL RDVSFSSYVN GTDEPFVLKL AESNGSLSTI TTSPQERLYL GRKKAEDGEI GVFGAEKYFN GGMDEGKPSI ANKIRGMNET
101: PRLANKNGGT NEEKSLTASK SARRCQHQNE EGVGFEAIKP KIQPGTPSMI SESSFMRSES SWDSQSALLT SVLRNPPRNK TKMTPGKSLL ASLCCKCSCS
201: DKNSVETDEY VGENRSNKGA SCGGVDGEAI TKEPIKTGRE LIDLVQINKQ RSESWGKEAM HHKKFNELGI GLHRENCFTL PVAKSGAGNL AVKLQLGEGE
301: GRKPRKSLEI FGSPILQKGH KSLSLERRLT MLSWEATPRV EEPGINNDTE SDASSDLFEI ESLSSRVAPF LARQESDGMS GCITPTTCYA PSEASIEWSV
401: VTASVADYSV MSDSDEQRPP SITSSKPVFT SITPTKTASK EVKRRPPSIL SGCKNDKAVR VAGDAYMTND KAISDPRGRP RSSAFVPMPT TRFEAETTLT
501: GFGSGSSFSR SHSQHASHLL YI

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.