CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10586
KRH11936
KRH21782
KRH23618
KRH36969
KRH42114
KRH49804
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	KRH52586	AT1G22920.1	21798944
AT2G02950.1	KRH61926	AT1G22920.1	21798944
AT2G02950.1	KRH11936	AT2G18790.1	10348744
AT2G02950.1	KRH36969	AT2G18790.1	10348744
AT2G02950.1	KRH10586	AT5G64330.1	16777956
AT2G02950.1	KRH21782	AT5G64330.1	16777956
AT2G02950.1	KRH23618	AT5G64330.1	16777956
AT2G02950.1	KRH42114	AT5G64330.1	16777956
AT2G02950.1	KRH49804	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74851	Soybean	nucleus, plastid	74.85	74.85
KRG99090	Soybean	cytosol, nucleus, peroxisome	43.41	42.46
KRH45905	Soybean	nucleus	42.19	39.02
VIT_01s0026g02330.t01	Wine grape	nucleus	38.34	36.21
Bra024800.1-P	Field mustard	nucleus, plastid	21.3	33.02
CDY03026	Canola	plastid	25.15	31.63
CDY39328	Canola	nucleus	25.56	30.22
AT1G14280.1	Thale cress	plastid	26.98	30.09
CDX84038	Canola	cytosol	22.92	29.97
CDY49100	Canola	plastid	26.37	29.89
Bra019666.1-P	Field mustard	plastid	26.37	29.89
AT2G02950.1	Thale cress	plastid	26.57	29.84
CDY45189	Canola	plastid	24.95	29.78
CDY17423	Canola	plastid	25.36	29.76
CDY60835	Canola	plastid	25.36	29.76
Bra017406.1-P	Field mustard	plastid	24.95	29.36
CDY62179	Canola	plastid	23.53	28.09
CDY09346	Canola	plastid	23.33	27.71
Bra026572.1-P	Field mustard	plastid	23.12	27.47
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	19.68	23.43
CDX83749	Canola	cytosol	10.75	23.14
GSMUA_Achr10P...	Banana	nucleus	15.42	21.71

Protein Annotations

EMBL:ACUP02000791	EnsemblPlants:KRH70717	EnsemblPlantsGene:GLYMA_02G106800	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4	ProteinID:KRH70717
ProteinID:KRH70717.1	SEG:seg	UniParc:UPI0006EDDCFC	UniProt:A0A0R0KUJ9	MapMan:26.1.2.2.3	:

Description

hypothetical protein

Coordinates

chr2:-:10169783..10171297

Molecular Weight (calculated)

54150.4 Da

IEP (calculated)

9.296

GRAVY (calculated)

-0.787

Length

493 amino acids

Sequence
(BLAST)

001: MVISAATSNN NNIHQLQSFN SQNNNYHLRD ASFSSYLNNK EEILTESGHG YVSSRKDPLG VKKEDDGEIG VFEAEKYFNG EEIGSPPRVA DNDANKHRPQ
101: KDEQTALVTR KYKVQNGTPS VRSESSLNSQ SALLQSAVRN SSRNMKSKLH RKSFLAGLGC KCYCSDKNSV DISDHAGEIS FSKNSSHGKT TSRNMFNADP
201: EANHSVKVTR PHAAEISINK DVYFQRPEKL GVGLSKENRN NPAKMQLQQV EKSRNSLEVF GSPILSSRSK SLSFDKRLAK TSSSSWDAAP KIEETDFSAN
301: SGGNYNDADS DASSDLFEIE SLTGKSNSFF LGRSSSNVVS SCASPTTCYA PSEVSIEWSV ATASALEYSA MSDYDDQRSI GTTRSPITTS LVSSNGKPKV
401: VVKETQRRRP SMLLGCKSQK AVGVALDAFT TYEKTSSNAN SRRRSDTFPQ VTEFKTETTK EGSFGARHNK QHAYATNPLQ RSLSPHPSQL LYI

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.