CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10586
KRH11936
KRH21782
KRH23618
KRH36969
KRH42114
KRH49804
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	KRH52586	AT1G22920.1	21798944
AT2G02950.1	KRH61926	AT1G22920.1	21798944
AT2G02950.1	KRH11936	AT2G18790.1	10348744
AT2G02950.1	KRH36969	AT2G18790.1	10348744
AT2G02950.1	KRH10586	AT5G64330.1	16777956
AT2G02950.1	KRH21782	AT5G64330.1	16777956
AT2G02950.1	KRH23618	AT5G64330.1	16777956
AT2G02950.1	KRH42114	AT5G64330.1	16777956
AT2G02950.1	KRH49804	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99090	Soybean	cytosol, nucleus, peroxisome	67.92	71.83
KRH70717	Soybean	nucleus	39.02	42.19
KRH74851	Soybean	nucleus, plastid	37.52	40.57
VIT_01s0026g02330.t01	Wine grape	nucleus	36.02	36.78
CDY03026	Canola	plastid	22.51	30.61
AT2G02950.1	Thale cress	plastid	24.77	30.07
CDY39328	Canola	nucleus	23.26	29.74
CDX84038	Canola	cytosol	21.01	29.71
Bra024800.1-P	Field mustard	nucleus, plastid	17.64	29.56
CDY45189	Canola	plastid	22.89	29.54
CDY49100	Canola	plastid	24.02	29.43
Bra019666.1-P	Field mustard	plastid	23.83	29.2
AT1G14280.1	Thale cress	plastid	24.02	28.96
CDY17423	Canola	plastid	22.7	28.81
CDY60835	Canola	plastid	22.7	28.81
Bra017406.1-P	Field mustard	plastid	22.33	28.4
CDY62179	Canola	plastid	21.39	27.6
Bra026572.1-P	Field mustard	plastid	21.39	27.47
CDY09346	Canola	plastid	21.39	27.47
CDX83749	Canola	cytosol	10.88	25.33
GSMUA_Achr10P...	Banana	nucleus	15.38	23.43
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	18.01	23.19

Protein Annotations

EMBL:ACUP02005294	EnsemblPlants:KRH45905	EnsemblPlantsGene:GLYMA_08G300500	EntrezGene:100808154	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4
ProteinID:KRH45905	ProteinID:KRH45905.1	SEG:seg	UniParc:UPI0002338830	UniProt:K7L9T6	MapMan:26.1.2.2.3

Description

hypothetical protein

Coordinates

chr8:-:41864566..41866167

Molecular Weight (calculated)

58638.6 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.668

Length

533 amino acids

Sequence
(BLAST)

001: MVNTISSTTN SNFYHQLHTF NYDDSNNNHL YDATFSPYLN GNNEGTTIVG RLGEPSQKLN PLKSPLQKLE KKEENGEIGV FGAEKYFNVE VETPRSTTSS
101: IATPKYLHRQ RDEPMAIIAT RKHGLPYGTP SIRSESTTCN SQSALLQSGM MMRNSLRNKK DNNKKGHQAK SVLAGLSFKC SCSDKDSVDA GEISFSKPAT
201: YGAVHDKKTR RKLVDIAALD ASHSIKISKP NAELLKINNV YFQTQEGTFG NRQKSSLAFS SLSSASGNQN HILVTKMQQQ QLDEVVEAEK PRNSIEVFGS
301: PTILKNKLKS LSFDRTTTRF AMASSRDGTP RLLLEEIDHS NYINDAASDA SSDLFEIESI KSKTNPFLAR QTSDAAASSC VSPTNGYAPS EASIEWSVAT
401: ASAAVMSDCE EQMSEVTIRS PIRTTTKTTF ANGKAKSTTK EVQRIRRPSM LLGCKNHKSV RVAGDAYITY ENPSSTPKLR SRTNSSSQVA RFPSETKLGN
501: FGAKHGQHHH HAYATPSPLQ HSHSPHASKL LYI

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.