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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG92422
KRG93616
KRG96615 nucleus
KRG99090
KRG99225
KRH01254
KRH02687 cytosol
KRH03857
KRH05520
KRH11194
KRH11936
KRH12419 cytosol
KRH12820
KRH13218
KRH14151 cytosol, nucleus
KRH14152 cytosol, nucleus
KRH14801
KRH15497
KRH18417
KRH19209 cytosol
KRH21063
KRH22900
KRH25675 cytosol
KRH26422
KRH31567
KRH33663 nucleus
KRH34384
KRH36969
KRH37419 cytosol
KRH37778
KRH42550
KRH43218
KRH44805
KRH44979
KRH45761
KRH45905
KRH55846 cytosol
KRH57147
KRH58233
KRH58644
KRH59383
KRH68348 nucleus
KRH69122
KRH69138 nucleus
KRH69443
KRH70717
KRH73341
KRH73984 cytosol, nucleus
KRH74701
KRH74851

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18790.1 KRG92422 AT1G04400.1 11089975
AT2G18790.1 KRH13218 AT1G04400.1 11089975
AT2G18790.1 KRH34384 AT1G04400.1 11089975
AT2G18790.1 KRH69122 AT1G04400.1 11089975
AT2G18790.1 KRG99225 AT1G10470.1 11691995
AT2G18790.1 KRH45761 AT1G10470.1 11691995
AT2G18790.1 KRH69443 AT1G10470.1 11691995
AT2G18790.1 KRH74701 AT1G10470.1 11691995
AT2G18790.1 KRG99090 AT2G02950.1 10348744
AT2G18790.1 KRH45905 AT2G02950.1 10348744
AT2G18790.1 KRH70717 AT2G02950.1 10348744
AT2G18790.1 KRH74851 AT2G02950.1 10348744
AT2G18790.1 KRH11936 AT2G18790.1 15273290
AT2G18790.1 KRH36969 AT2G18790.1 15273290
AT2G18790.1 KRH11936 AT2G18790.1 19286967
AT2G18790.1 KRH36969 AT2G18790.1 19286967
AT2G18790.1 KRH02687 AT2G26190.1 23964902
AT2G18790.1 KRH12419 AT2G26190.1 23964902
AT2G18790.1 KRH19209 AT2G26190.1 23964902
AT2G18790.1 KRH37419 AT2G26190.1 23964902
AT2G18790.1 KRH02687 AT2G26190.1 23964902
AT2G18790.1 KRH12419 AT2G26190.1 23964902
AT2G18790.1 KRH19209 AT2G26190.1 23964902
AT2G18790.1 KRH37419 AT2G26190.1 23964902
AT2G18790.1 KRH14801 AT2G32950.1 11752373
AT2G18790.1 KRH73341 AT2G32950.1 11752373
AT2G18790.1 KRH05520 AT2G34590.1 23964902
AT2G18790.1 KRH15497 AT2G34590.1 23964902
AT2G18790.1 KRH42550 AT2G34590.1 23964902
AT2G18790.1 KRH58644 AT2G34590.1 23964902
AT2G18790.1 KRH25675 AT2G42400.1 22904146
AT2G18790.1 KRH55846 AT2G42400.1 22904146
AT2G18790.1 KRH25675 AT2G42400.1 22904146
AT2G18790.1 KRH55846 AT2G42400.1 22904146
AT2G18790.1 KRG96615 AT2G46970.1 23964902
AT2G18790.1 KRH33663 AT2G46970.1 23964902
AT2G18790.1 KRH68348 AT2G46970.1 23964902
AT2G18790.1 KRH69138 AT2G46970.1 23964902
AT2G18790.1 KRG96615 AT2G46970.1 23964902
AT2G18790.1 KRH33663 AT2G46970.1 23964902
AT2G18790.1 KRH68348 AT2G46970.1 23964902
AT2G18790.1 KRH69138 AT2G46970.1 23964902
AT2G18790.1 KRH31567 AT4G13940.1 23964902
AT2G18790.1 KRH11936 AT4G16250.1 15273290
AT2G18790.1 KRH36969 AT4G16250.1 15273290
AT2G18790.1 KRH11936 AT4G16250.1 19286967
AT2G18790.1 KRH36969 AT4G16250.1 19286967
AT2G18790.1 KRH12820 AT4G18130.1 15273290
AT2G18790.1 KRH37778 AT4G18130.1 15273290
AT2G18790.1 KRH12820 AT4G18130.1 19286967
AT2G18790.1 KRH37778 AT4G18130.1 19286967
AT2G18790.1 KRH03857 AT4G20360.1 23964902
AT2G18790.1 KRH57147 AT4G20360.1 23964902
AT2G18790.1 KRG93616 AT5G15450.1 23964902
AT2G18790.1 KRH01254 AT5G15450.1 23964902
AT2G18790.1 KRH18417 AT5G15450.1 23964902
AT2G18790.1 KRH44979 AT5G15450.1 23964902
AT2G18790.1 KRH11194 AT5G46240.1 23964902
AT2G18790.1 KRH21063 AT5G46240.1 23964902
AT2G18790.1 KRH44805 AT5G46240.1 23964902
AT2G18790.1 KRH58233 AT5G46240.1 23964902
AT2G18790.1 KRH14151 AT5G48300.1 23964902
AT2G18790.1 KRH14152 AT5G48300.1 23964902
AT2G18790.1 KRH73984 AT5G48300.1 23964902
AT2G18790.1 KRH14151 AT5G48300.1 23964902
AT2G18790.1 KRH14152 AT5G48300.1 23964902
AT2G18790.1 KRH73984 AT5G48300.1 23964902
AT2G18790.1 KRH14151 AT5G48300.1 23964902
AT2G18790.1 KRH14152 AT5G48300.1 23964902
AT2G18790.1 KRH73984 AT5G48300.1 23964902
AT2G18790.1 KRH22900 AT5G60600.1 23964902
AT2G18790.1 KRH26422 AT5G60600.1 23964902
AT2G18790.1 KRH43218 AT5G65090.1 23964902
AT2G18790.1 KRH59383 AT5G65090.1 23964902
AT4G16250.1 KRH11936 AT2G18790.1 15273290
AT4G16250.1 KRH36969 AT2G18790.1 15273290
AT4G16250.1 KRH11936 AT2G18790.1 19286967
AT4G16250.1 KRH36969 AT2G18790.1 19286967
AT4G16250.1 KRH11936 AT4G16250.1 15273290
AT4G16250.1 KRH36969 AT4G16250.1 15273290
AT4G16250.1 KRH11936 AT4G16250.1 19286967
AT4G16250.1 KRH36969 AT4G16250.1 19286967
AT4G16250.1 KRH12820 AT4G18130.1 15273290
AT4G16250.1 KRH37778 AT4G18130.1 15273290
AT4G16250.1 KRH12820 AT4G18130.1 19286967
AT4G16250.1 KRH37778 AT4G18130.1 19286967
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH36969 Soybean nucleus 93.47 94.46
VIT_05s0077g00940.t01 Wine grape cytosol 80.85 82.29
PGSC0003DMT400061712 Potato cytosol, plastid 78.85 80.18
Solyc01g059870.2.1 Tomato cytosol 78.24 79.49
PGSC0003DMT400069974 Potato mitochondrion 73.54 75.11
Os03t0309200-01 Rice nucleus, plasma membrane 73.19 75.09
Solyc05g053410.2.1 Tomato nucleus, plastid 73.02 74.84
Zm00001d028905_P001 Maize extracellular 73.8 73.04
TraesCS4D01G183400.1 Wheat plastid 73.72 72.77
TraesCS4A01G122500.2 Wheat plastid 73.63 72.56
HORVU4Hr1G053400.1 Barley plasma membrane 73.72 72.52
TraesCS4B01G182400.1 Wheat plastid 73.54 72.47
AT2G18790.1 Thale cress nucleus 73.89 72.44
Bra022192.1-P Field mustard cytosol 74.85 72.15
EER94971 Sorghum plastid 73.54 71.73
GSMUA_Achr3P08340_001 Banana nucleus 67.8 71.53
AT4G16250.1 Thale cress plastid 71.89 70.96
Zm00001d047632_P001 Maize plastid 71.98 70.93
Bra001650.1-P Field mustard cytosol 8.44 63.4
KRH37778 Soybean nucleus 59.7 61.25
KRH12820 Soybean cytosol 57.88 60.56
Zm00001d025231_P001 Maize cytosol 8.18 58.75
Zm00001d000219_P001 Maize cytosol 5.66 58.56
KRG90417 Soybean nucleus 51.44 52.63
KRG96653 Soybean nucleus 50.3 51.15
KRH33709 Soybean endoplasmic reticulum, golgi, plastid 51.26 49.45
KRH68382 Soybean endoplasmic reticulum, plastid, vacuole 40.03 47.23
CDY42549 Canola cytosol 8.44 42.92
Zm00001d024238_P001 Maize cytosol 13.84 36.14
Protein Annotations
Gene3D:1.10.287.130EntrezGene:100794865MapMan:26.1.1.1MapMan:26.4.1.2Gene3D:3.30.450.20Gene3D:3.30.450.270
Gene3D:3.30.450.40Gene3D:3.30.565.10EMBL:ACUP02009255InterPro:GAFInterPro:GAF-like_dom_sfEnsemblPlantsGene:GLYMA_15G140000
GO:GO:0000155GO:GO:0000160GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009628GO:GO:0009881
GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0017006GO:GO:0018298GO:GO:0019538
GO:GO:0023014GO:GO:0038023GO:GO:0042803GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sf
InterPro:HisK_dim/PInterPro:His_kinase_domUniProt:I1MGE5InterPro:IPR000014InterPro:IPR005467InterPro:IPR016132
InterPro:IPR029016InterPro:IPR036890EnsemblPlants:KRH11936ProteinID:KRH11936ProteinID:KRH11936.1InterPro:PAS
InterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360PFAM:PF00512PFAM:PF00989
PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245
PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF12InterPro:Phyto_chromo_BS
InterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regSMART:SM00065SMART:SM00091
SMART:SM00387SMART:SM00388SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874TIGRFAMs:TIGR00229
UniParc:UPI000233BCDDSEG:seg::::
Description
hypothetical protein
Coordinates
chr15:-:11435551..11442683
Molecular Weight (calculated)
127776.0 Da
IEP (calculated)
6.135
GRAVY (calculated)
-0.179
Length
1149 amino acids
Sequence
(BLAST)
0001: MASASGAENS SVPPSPLPPP PPPQIHTSRT KLSHHHHNNN NNNNNNIDST SKAIAQYTED ARLHAVFEQS GESGRSFDYS QSIRVTSESV PEQQITAYLL
0101: KIQRGGFIQP FGSMIAVDEP SFRILAYSDN ARDMLGITPQ SVPSLDDKND AAFALGTDIR TLFTHSSAVL LEKAFSAREI SLMNPIWIHS RTSGKPFYGI
0201: LHRIDVGIVI DLEPARTEDP ALSIAGAVQS QKLAVRAISQ LQSLPGGDVK LLCDTVVESV RELTGYDRVM VYRFHEDEHG EVVAETKRPD LEPYIGLHYP
0301: ATDIPQASRF LFKQNRVRMI VDCHASAVRV VQDEALVQPL CLVGSTLRAP HGCHAQYMAN MGSTASLVMA VIINGNDEEG VGGRTSMRLW GLVVCHHTSA
0401: RCIPFPLRYA CEFLMQAFGL QLNMELQLAA QSLEKRVLRT QTLLCDMLLR DSPTGIVTQS PSIMDLVKCD GAALYYQGNY YPLGVTPTEA QIRDIIEWLL
0501: AFHRDSTGLS TDSLADAGYP GAASLGDAVC GMAVAYITEK DFLFWFRSHT AKEIKWGGAK HHPEDKDDGQ RMHPRSSFKA FLEVVKSRSL PWENAEMDAI
0601: HSLQLILRDS FKDAEHSNSK AVLDPRMSEL ELQGVDELSS VAREMVRLIE TATAPIFAVD VDGRINGWNA KVSELTGLPV EEAMGKSLVR DLVFKESEET
0701: VDKLLSRALK GEEDKNVEIK MRTFGPEHQN KAVFVVVNAC SSKDYTNNVV GVCFVGQDVT GQKIVMDKFI NIQGDYKAIV HNPNPLIPPI FASDDNTCCL
0801: EWNTAMEKLT GWSRADVIGK MLVGEVFGSC CQLKGSDSIT KFMIVLHNAL GGHDTDRFPF SFLDRYGKHV QAFLTANKRV NMDGQIIGAF CFLQIVSPEL
0901: QQALKAQRQQ EKNSFARMKE LAYICQGVKN PLSGIRFTNS LLEATCLSNE QKQFLETSAA CEKQMLKIIH DVDIESIEDG SLELEKGEFL LGNVINAVVS
1001: QVMLLLRERN LQLIRDIPEE IKTLAVYGDQ LRIQQVLSDF LLNIVRYAPS PDGWVEIHVH PRIKQISDGL TLLHAEFRMV CPGEGLPPEL IQNMFNNSGW
1101: GTQEGLGLSM SRKILKLMNG EVQYIREAQR CYFYVLLELP VTRRSSKKC
Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.