CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11936
KRH36969

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	KRH11936	AT2G18790.1	22904146
AT2G42400.1	KRH36969	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55846	Soybean	nucleus	91.02	91.21
Zm00001d022145_P001	Maize	cytosol	12.32	56.19
KRH50133	Soybean	cytosol, nucleus, plastid	51.57	51.78
KRH30880	Soybean	cytosol	49.27	51.42
KRH20362	Soybean	cytosol, nucleus, plastid	50.73	50.84
KRH32695	Soybean	cytosol	49.06	50.54
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	54.91	49.72
AT2G42400.1	Thale cress	nucleus	44.47	47.33
CDX79871	Canola	nucleus	44.26	44.82
Bra016879.1-P	Field mustard	nucleus	45.09	44.63
GSMUA_Achr7P10980_001	Banana	mitochondrion, nucleus	47.18	44.58
CDY64518	Canola	nucleus	43.01	43.92
Bra004691.1-P	Field mustard	nucleus	44.05	43.87
GSMUA_Achr1P27380_001	Banana	cytosol	25.68	43.62
CDY14829	Canola	nucleus	44.05	43.42
CDY47967	Canola	nucleus	43.63	43.18
Zm00001d041158_P001	Maize	cytosol	26.93	41.75
Zm00001d045641_P001	Maize	cytosol	31.11	38.5
TraesCS3D01G291600.1	Wheat	mitochondrion	43.01	37.8
Os01t0753000-01	Rice	cytosol	41.96	37.64
GSMUA_Achr4P15020_001	Banana	nucleus	48.43	37.36
Zm00001d043500_P006	Maize	mitochondrion	41.75	36.43
TraesCS1A01G335900.1	Wheat	nucleus	40.92	36.03
TraesCS3B01G326500.4	Wheat	mitochondrion	42.8	35.59
TraesCS1D01G338300.2	Wheat	nucleus	42.8	35.16
HORVU1Hr1G076620.2	Barley	nucleus	42.59	34.69
TraesCS1B01G349200.1	Wheat	nucleus	42.17	34.47
EES18506	Sorghum	nucleus, plastid	41.75	32.84
TraesCS3A01G291900.1	Wheat	nucleus	43.42	32.55
Zm00001d038704_P002	Maize	plastid	40.92	32.45
GSMUA_Achr6P22210_001	Banana	nucleus	35.91	32.03
HORVU3Hr1G072260.1	Barley	plastid	43.63	31.81
HORVU3Hr1G023830.1	Barley	cytosol, plastid	4.18	31.75
Os05t0515700-01	Rice	nucleus	42.38	31.67
GSMUA_Achr10P...	Banana	plasma membrane	49.9	31.12
KXG33380	Sorghum	mitochondrion	41.54	31.09
Zm00001d012734_P002	Maize	cytosol	40.92	30.02
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	4.8	28.05
HORVU7Hr1G111470.1	Barley	nucleus	4.59	27.85
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	6.05	26.61
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	4.38	26.25
HORVU2Hr1G109410.1	Barley	mitochondrion	9.39	25.0
HORVU4Hr1G057220.1	Barley	nucleus	8.98	23.63
HORVU6Hr1G038800.6	Barley	nucleus	5.01	23.53
HORVU6Hr1G038750.11	Barley	nucleus	8.77	23.08

Protein Annotations

EntrezGene:100808629	MapMan:15.5.36	EMBL:ACUP02007314	EnsemblPlantsGene:GLYMA_12G120100	GO:GO:0000003	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009791	GO:GO:0009987	GO:GO:0048578	UniProt:K7LUC5	EnsemblPlants:KRH25675	ProteinID:KRH25675
ProteinID:KRH25675.1	ProteinID:KRH25676.1	ProteinID:KRH25677.1	ProteinID:KRH25678.1	PANTHER:PTHR33873	PANTHER:PTHR33873:SF4
UniParc:UPI000233CD56	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:12795436..12799577

Molecular Weight (calculated)

53849.0 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.768

Length

479 amino acids

Sequence
(BLAST)

001: MMRESSKGVG GSSSLQSMKE KEKHLVEKIQ GIFNSLQCAR KEGRGNDMVI FEEQMHQLLR EWKAELESPA NSLADGSFGS FPSELAQMLL GSEDKDDATS
101: PLTKPVPLKN EIHTNNISDG NFQFFQEKHF DDNQPLGHTF EGSASTLYNN AFNSSDMTQL DYHPFSLNQD MDHKPEGLIG QLDLYQDLRH NTEMKNSEST
201: QFSLEGFDCS QFFEADDNVQ HGENIIPNIL PNICPPPSAF LAPKCALWDC FRPAQGVEWC QNYCSSCHEL LANNEGLPGM TPILRPGGIG VKDGPLFDAV
301: LAKTQGKEVG IPSCEGAAST KSPWNAPEFF DLSFLEGETV REWLFFDKPR RAFESGNRKQ RSLPDYSGRG WHESRKQVMK EHGGQKRSYY MDPQPLSYLE
401: WHLYEYEINN QDGCALYRLE LKLVDKKKSP KGKVTKESLT DLQNKMGQLT AAVPSTDDGY GQPVKGKTKT KSENDESPK

Best Arabidopsis Sequence Match ( AT1G28520.1 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.