Factsheet for TraesCS3A01G291900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G122500.2
TraesCS4B01G182400.1
TraesCS4D01G183400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	TraesCS4A01G122500.2	AT2G18790.1	22904146
AT2G42400.1	TraesCS4B01G182400.1	AT2G18790.1	22904146
AT2G42400.1	TraesCS4D01G183400.1	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G291600.1	Wheat	mitochondrion	80.75	94.68
TraesCS3B01G326500.4	Wheat	mitochondrion	84.66	93.92
HORVU3Hr1G072260.1	Barley	plastid	79.03	76.86
Os01t0753000-01	Rice	cytosol	63.69	76.22
Zm00001d041158_P001	Maize	cytosol	35.84	74.11
Zm00001d043500_P006	Maize	mitochondrion	62.44	72.68
KXG33380	Sorghum	mitochondrion	62.6	62.5
Zm00001d012734_P002	Maize	cytosol	62.28	60.95
Zm00001d045641_P001	Maize	cytosol	34.9	57.62
TraesCS1A01G335900.1	Wheat	nucleus	46.95	55.15
PGSC0003DMT400058735	Potato	cytosol	27.86	53.78
KRH50133	Soybean	cytosol, nucleus, plastid	39.12	52.41
KRH20362	Soybean	cytosol, nucleus, plastid	38.81	51.88
Bra010864.1-P	Field mustard	nucleus	36.93	51.53
CDX90157	Canola	nucleus	36.78	51.42
VIT_10s0003g00500.t01	Wine grape	nucleus	38.97	51.34
KRH30880	Soybean	cytosol	36.62	50.98
PGSC0003DMT400081241	Potato	cytosol	37.25	50.96
CDY35753	Canola	nucleus	36.46	50.87
KRH32695	Soybean	cytosol	36.93	50.75
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	37.09	50.75
CDY34095	Canola	nucleus	36.78	49.47
AT1G28520.2	Thale cress	nucleus	37.56	49.38
GSMUA_Achr1P27380_001	Banana	cytosol	21.75	49.29
CDY30817	Canola	nucleus	37.09	49.07
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	36.62	49.06
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	40.06	48.39
AT2G42400.1	Thale cress	nucleus	31.61	44.89
KRH55846	Soybean	nucleus	33.02	44.14
GSMUA_Achr4P15020_001	Banana	nucleus	42.88	44.12
KRH25675	Soybean	nucleus	32.55	43.42
Bra032913.1-P	Field mustard	mitochondrion, plastid	37.25	41.9
Bra016879.1-P	Field mustard	nucleus	31.61	41.74
CDY64518	Canola	nucleus	30.52	41.58
CDY14829	Canola	nucleus	31.46	41.36
CDX79871	Canola	nucleus	30.52	41.23
CDY47967	Canola	nucleus	30.83	40.7
Bra004691.1-P	Field mustard	nucleus	30.52	40.54
GSMUA_Achr6P22210_001	Banana	nucleus	32.86	39.11

Protein Annotations

EnsemblPlants:TraesCS3A01G291900.1

EnsemblPlantsGene:TraesCS3A01G291900

PANTHER:PTHR33873

PANTHER:PTHR33873:SF3

SEG:seg

MapMan:15.5.36

Description

No Description!

Coordinates

chr3A:-:522060145..522065262

Molecular Weight (calculated)

71758.8 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.779

Length

639 amino acids

Sequence
(BLAST)

001: MTLLPHDAFD FDESWAGFLP IYPARRPPTP ASFLPRPSLF ASRPSKVAAI PSEEEKRHQI IRASPSPLPW RKGWRERPPT PRRRSIGAAE RTARASAMRK
101: GPSRSGSARH QQFRARAKTR VDDLQDMFSG LQYARKEARS TDAVLLEAQL HQMLREWRAE LSVPSPASSL QQGNNNRDPP SETPRPPQLA AAEEEDDATS
201: KLVEQKPRPS ANQAHKHAQG DQDMKPEPRE EAIADPVTVA QQPTSLGPGV ITTPATAGFH DQMYYVNQEL SVEDFLYDDD YKINLPGSNP EILNNLEGIG
301: HQEYLQFNLP QELPPNAYLD MNNYGQNAGD GFLHMSDLLT TMSPAPASFL RPKCALWDCP RPAQGSESWQ DYCSMYHAEL AVKEEGPPGT MPVIRPRGID
401: LKDGPLFAAL SAKIQGKHVG VPVCEGAATT KSPWNAPELF DLYIFEGESM REWLFFDKPR RAFDSGNRKQ RSLPDYNGRG WHESRKQVMK DFGGLKRSYY
501: MDPQPSSSYE WHLYEYEIND RDAFALYRLE FKSSDAKKSA KSKFTCSPLI EIQQQMVRLS ADGPVENKRT ARARTQDVST NIYPVQNNTA QANAPDAYQA
601: ASQVDQMTFL NGSVVYGPHL PYGYSTEGGD FYWNSNDGA

Best Arabidopsis Sequence Match ( AT1G28520.5 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.