Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P08340_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42400.1 | GSMUA_Achr3P08340_001 | AT2G18790.1 | 22904146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022145_P001 | Maize | cytosol | 14.89 | 40.0 |
| HORVU3Hr1G023830.1 | Barley | cytosol, plastid | 7.8 | 34.92 |
| GSMUA_Achr6P22210_001 | Banana | nucleus | 65.96 | 34.64 |
| HORVU4Hr1G057240.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 9.57 | 33.75 |
| HORVU5Hr1G058480.1 | Barley | cytosol, mitochondrion, nucleus | 9.57 | 32.93 |
| KRH30880 | Soybean | cytosol | 53.19 | 32.68 |
| VIT_10s0003g00500.t01 | Wine grape | nucleus | 56.03 | 32.58 |
| KRH32695 | Soybean | cytosol | 53.19 | 32.26 |
| KRH20362 | Soybean | cytosol, nucleus, plastid | 54.61 | 32.22 |
| KRH50133 | Soybean | cytosol, nucleus, plastid | 54.26 | 32.08 |
| CDY34095 | Canola | nucleus | 52.84 | 31.37 |
| CDX90157 | Canola | nucleus | 50.71 | 31.29 |
| Bra010864.1-P | Field mustard | nucleus | 50.71 | 31.22 |
| CDY30817 | Canola | nucleus | 53.19 | 31.06 |
| AT1G28520.2 | Thale cress | nucleus | 53.19 | 30.86 |
| CDY35753 | Canola | nucleus | 50.0 | 30.79 |
| HORVU7Hr1G111470.1 | Barley | nucleus | 8.51 | 30.38 |
| VIT_12s0028g02670.t01 | Wine grape | mitochondrion, nucleus | 55.67 | 29.68 |
| GSMUA_Achr7P10980_001 | Banana | mitochondrion, nucleus | 53.19 | 29.59 |
| HORVU6Hr1G038800.6 | Barley | nucleus | 10.64 | 29.41 |
| Solyc10g008880.2.1 | Tomato | cytosol, mitochondrion | 48.94 | 28.93 |
| PGSC0003DMT400081241 | Potato | cytosol | 47.16 | 28.48 |
| Solyc02g077450.2.1 | Tomato | cytosol, mitochondrion, nucleus | 47.16 | 28.48 |
| HORVU2Hr1G042110.1 | Barley | cytosol, mitochondrion, nucleus | 10.64 | 27.52 |
| GSMUA_Achr4P15020_001 | Banana | nucleus | 59.93 | 27.21 |
| AT2G42400.1 | Thale cress | nucleus | 43.26 | 27.11 |
| Bra032913.1-P | Field mustard | mitochondrion, plastid | 52.84 | 26.23 |
| Os01t0753000-01 | Rice | cytosol | 49.29 | 26.03 |
| KRH25675 | Soybean | nucleus | 43.62 | 25.68 |
| TraesCS3D01G291600.1 | Wheat | mitochondrion | 48.94 | 25.32 |
| HORVU6Hr1G038750.11 | Barley | nucleus | 16.31 | 25.27 |
| Zm00001d043500_P006 | Maize | mitochondrion | 48.94 | 25.14 |
| KRH55846 | Soybean | nucleus | 42.55 | 25.1 |
| PGSC0003DMT400058735 | Potato | cytosol | 28.72 | 24.47 |
| CDY64518 | Canola | nucleus | 40.43 | 24.31 |
| TraesCS1A01G335900.1 | Wheat | nucleus | 46.81 | 24.26 |
| Bra016879.1-P | Field mustard | nucleus | 41.49 | 24.17 |
| HORVU1Hr1G076620.2 | Barley | nucleus | 50.35 | 24.15 |
| TraesCS3B01G326500.4 | Wheat | mitochondrion | 49.29 | 24.13 |
| TraesCS1B01G349200.1 | Wheat | nucleus | 50.0 | 24.06 |
| TraesCS1D01G338300.2 | Wheat | nucleus | 49.29 | 23.84 |
| CDY47967 | Canola | nucleus | 40.78 | 23.76 |
| CDX79871 | Canola | nucleus | 39.72 | 23.68 |
| CDY14829 | Canola | nucleus | 40.78 | 23.66 |
| HORVU4Hr1G057220.1 | Barley | nucleus | 15.25 | 23.63 |
| Bra004691.1-P | Field mustard | nucleus | 40.07 | 23.49 |
| HORVU2Hr1G109410.1 | Barley | mitochondrion | 14.89 | 23.33 |
| Zm00001d038704_P002 | Maize | plastid | 49.29 | 23.01 |
| EES18506 | Sorghum | nucleus, plastid | 49.29 | 22.82 |
| KXG33380 | Sorghum | mitochondrion | 51.77 | 22.81 |
| Os05t0515700-01 | Rice | nucleus | 49.65 | 21.84 |
| TraesCS3A01G291900.1 | Wheat | nucleus | 49.29 | 21.75 |
| HORVU3Hr1G072260.1 | Barley | plastid | 49.65 | 21.31 |
| Zm00001d012734_P002 | Maize | cytosol | 48.94 | 21.13 |
| Zm00001d041158_P001 | Maize | cytosol | 23.05 | 21.04 |
| GSMUA_Achr10P... | Banana | plasma membrane | 54.26 | 19.92 |
| Zm00001d045641_P001 | Maize | cytosol | 27.3 | 19.9 |
Protein Annotations
| MapMan:15.5.36 | ncoils:Coil | GO:GO:0000003 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0048578 | EnsemblPlantsGene:GSMUA_Achr1G27380_001 | EnsemblPlants:GSMUA_Achr1P27380_001 | EnsemblPlants:GSMUA_Achr1T27380_001 | UniProt:M0S3J5 | PANTHER:PTHR33873 |
| PANTHER:PTHR33873:SF1 | UniParc:UPI000295B0A6 | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G27380_001]
Coordinates
chr1:-:24049600..24051181
Molecular Weight (calculated)
31081.0 Da
IEP (calculated)
4.648
GRAVY (calculated)
-0.178
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTGCKSALH HLHRDKARNR VDDLQSAIKD CRAADVAVLE EQVYQRLREC WAELNQPSPT TSLQVIESEA DLSFCLFTLR LLQLSEEEDD ATSKLAELAF
101: GNTPKPELVE LQQADVGAAQ GGRAANFQEV NTNLIFFSLC SKLQTGPDNV TCHEGNGRNV FPYMSYVLPA ICPPPSAFLR PKCALWDCPR PAQGSEWCRD
201: YCSSFHTTLA INEDMPGMTL VLRPGGIDLK DGPLFTALSA KIQGKIVGIP VCEGARSPWN ASGMAIDLCV LEDESLREWL FF
101: GNTPKPELVE LQQADVGAAQ GGRAANFQEV NTNLIFFSLC SKLQTGPDNV TCHEGNGRNV FPYMSYVLPA ICPPPSAFLR PKCALWDCPR PAQGSEWCRD
201: YCSSFHTTLA INEDMPGMTL VLRPGGIDLK DGPLFTALSA KIQGKIVGIP VCEGARSPWN ASGMAIDLCV LEDESLREWL FF
001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP
Arabidopsis Description
VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.