CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	EER94971	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038704_P002	Maize	plastid	90.15	90.89
HORVU3Hr1G023830.1	Barley	cytosol, plastid	7.55	73.02
Zm00001d022145_P001	Maize	cytosol	12.32	71.43
Os05t0515700-01	Rice	nucleus	70.61	67.08
TraesCS1B01G349200.1	Wheat	nucleus	64.04	66.55
HORVU1Hr1G076620.2	Barley	nucleus	64.04	66.33
TraesCS1D01G338300.2	Wheat	nucleus	63.22	66.04
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	8.7	64.63
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	8.21	62.5
TraesCS1A01G335900.1	Wheat	nucleus	55.17	61.76
KXG33380	Sorghum	mitochondrion	59.11	56.25
KRH20362	Soybean	cytosol, nucleus, plastid	41.71	53.14
KRH50133	Soybean	cytosol, nucleus, plastid	41.54	53.04
HORVU6Hr1G038800.6	Barley	nucleus	8.87	52.94
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	9.36	52.29
KRH30880	Soybean	cytosol	39.41	52.29
VIT_10s0003g00500.t01	Wine grape	nucleus	41.54	52.16
PGSC0003DMT400058735	Potato	cytosol	28.24	51.96
HORVU7Hr1G111470.1	Barley	nucleus	6.73	51.9
KRH32695	Soybean	cytosol	39.57	51.83
PGSC0003DMT400081241	Potato	cytosol	39.41	51.39
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	39.08	50.96
CDY34095	Canola	nucleus	39.57	50.74
Bra010864.1-P	Field mustard	nucleus	38.1	50.66
CDX90157	Canola	nucleus	37.93	50.55
CDY35753	Canola	nucleus	37.77	50.22
AT1G28520.2	Thale cress	nucleus	40.07	50.21
CDY30817	Canola	nucleus	39.74	50.1
GSMUA_Achr1P27380_001	Banana	cytosol	22.82	49.29
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	38.59	49.27
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	42.04	48.39
AT2G42400.1	Thale cress	nucleus	32.84	44.44
GSMUA_Achr4P15020_001	Banana	nucleus	44.5	43.64
HORVU6Hr1G038750.11	Barley	nucleus	12.97	43.41
KRH55846	Soybean	nucleus	33.33	42.47
Bra032913.1-P	Field mustard	mitochondrion, plastid	39.57	42.43
HORVU4Hr1G057220.1	Barley	nucleus	12.64	42.31
KRH25675	Soybean	nucleus	32.84	41.75
CDX79871	Canola	nucleus	32.35	41.65
CDY64518	Canola	nucleus	31.69	41.15
Bra004691.1-P	Field mustard	nucleus	32.35	40.96
CDY14829	Canola	nucleus	32.35	40.53
Bra016879.1-P	Field mustard	nucleus	32.18	40.5
GSMUA_Achr6P22210_001	Banana	nucleus	35.14	39.85
CDY47967	Canola	nucleus	31.53	39.67
HORVU2Hr1G109410.1	Barley	mitochondrion	11.17	37.78

Protein Annotations

EnsemblPlants:EES18506	EnsemblPlantsGene:SORBI_3009G198100	EntrezGene:8067514	GO:GO:0000003	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009987	GO:GO:0048578	PANTHER:PTHR33873	PANTHER:PTHR33873:SF3	ProteinID:EES18506	ProteinID:EES18506.1
RefSeq:XP_002440076.1	SEG:seg	UniParc:UPI0001A88B75	UniProt:C5Z0Y9	MapMan:15.5.36	:

Description

hypothetical protein

Coordinates

chr9:+:54864552..54868259

Molecular Weight (calculated)

66799.1 Da

IEP (calculated)

5.413

GRAVY (calculated)

-0.730

Length

609 amino acids

Sequence
(BLAST)

001: MAGDPAAGGG GDAHPASGSK SSRSSTRHRQ FRDRAKVRVD DLQEMFCGLQ SARKESRSAD AAVLEEQVHQ MLREWRAELS VPSPASSLQN SQGNNREASD
101: PPSDTLRLLQ LVVPEEEDDA TSKLLVPQSA QQAPPPHQSH DHGQDSRMAN TDQQCEAMDG GTAPAQHSLG QGVEAGCGEV AAVANAMFND QMYYIDQELS
201: IDDFLCDDDY KINISGSNED QFNNLHGIGQ LEHQQFDLPL DLPPTHSYAD ANNSEQNAGD VFVHMSDLLT TIWPSPSQYL GPKCALWDCG RPVGGTEDSG
301: DYCNPYHAGL ALNDDGLLGT RPVMRPKGID LKDGPLFAAL IAKVQGKNVG IPVCGGAATS KSPWNAPELF DLSLLEGESL REWLFFDTPR RAFESGNRKQ
401: RSLPDYSGRG WHESRKQVMK DFAGLKRSYY MDPQPSSSHE WHLFEYEINA SDALALYRLE YKSSDSKKSA KSKLSSSPLN EIQQQMGRLT ADSPVENKRT
501: ARSKPKANQN DINANIHAHV NSPSQVNAPN AYQTTPQVNQ MTFLNGNVVY GPHLPHSENV VHGPHLPQSE NVVYGPHLPH SENVVYGPHL PHGYKAEGSS
601: FFWNPSDGT

Best Arabidopsis Sequence Match ( AT1G28520.5 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.