Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G053400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42400.1 | HORVU4Hr1G053400.1 | AT2G18790.1 | 22904146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G057240.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 40.11 | 91.25 |
| HORVU3Hr1G023830.1 | Barley | cytosol, plastid | 30.77 | 88.89 |
| HORVU5Hr1G058480.1 | Barley | cytosol, mitochondrion, nucleus | 36.81 | 81.71 |
| HORVU6Hr1G038750.11 | Barley | nucleus | 68.68 | 68.68 |
| HORVU6Hr1G038800.6 | Barley | nucleus | 37.36 | 66.67 |
| HORVU2Hr1G042110.1 | Barley | cytosol, mitochondrion, nucleus | 39.56 | 66.06 |
| HORVU7Hr1G111470.1 | Barley | nucleus | 27.47 | 63.29 |
| HORVU2Hr1G109410.1 | Barley | mitochondrion | 59.34 | 60.0 |
| TraesCS1A01G335900.1 | Wheat | nucleus | 46.15 | 15.44 |
| GSMUA_Achr1P27380_001 | Banana | cytosol | 23.63 | 15.25 |
| TraesCS1D01G338300.2 | Wheat | nucleus | 46.15 | 14.41 |
| Zm00001d022145_P001 | Maize | cytosol | 8.24 | 14.29 |
| TraesCS1B01G349200.1 | Wheat | nucleus | 45.6 | 14.16 |
| HORVU1Hr1G076620.2 | Barley | nucleus | 43.96 | 13.61 |
| EES18506 | Sorghum | nucleus, plastid | 42.31 | 12.64 |
| Zm00001d038704_P002 | Maize | plastid | 41.76 | 12.58 |
| Os05t0515700-01 | Rice | nucleus | 41.21 | 11.7 |
| PGSC0003DMT400081241 | Potato | cytosol | 29.67 | 11.56 |
| Solyc02g077450.2.1 | Tomato | cytosol, mitochondrion, nucleus | 29.12 | 11.35 |
| VIT_10s0003g00500.t01 | Wine grape | nucleus | 30.22 | 11.34 |
| KRH20362 | Soybean | cytosol, nucleus, plastid | 29.67 | 11.3 |
| CDX90157 | Canola | nucleus | 28.02 | 11.16 |
| Bra010864.1-P | Field mustard | nucleus | 28.02 | 11.14 |
| Solyc10g008880.2.1 | Tomato | cytosol, mitochondrion | 29.12 | 11.11 |
| KRH50133 | Soybean | cytosol, nucleus, plastid | 29.12 | 11.11 |
| CDY34095 | Canola | nucleus | 28.57 | 10.95 |
| KRH30880 | Soybean | cytosol | 27.47 | 10.89 |
| KRH32695 | Soybean | cytosol | 27.47 | 10.75 |
| CDY35753 | Canola | nucleus | 26.92 | 10.7 |
| VIT_12s0028g02670.t01 | Wine grape | mitochondrion, nucleus | 30.77 | 10.59 |
| CDY30817 | Canola | nucleus | 28.02 | 10.56 |
| AT1G28520.2 | Thale cress | nucleus | 28.02 | 10.49 |
| GSMUA_Achr6P22210_001 | Banana | nucleus | 30.77 | 10.43 |
| Bra032913.1-P | Field mustard | mitochondrion, plastid | 29.12 | 9.33 |
| HORVU3Hr1G072260.1 | Barley | plastid | 33.52 | 9.28 |
| CDY64518 | Canola | nucleus | 23.63 | 9.17 |
| CDX79871 | Canola | nucleus | 23.63 | 9.09 |
| GSMUA_Achr4P15020_001 | Banana | nucleus | 30.77 | 9.02 |
| KRH55846 | Soybean | nucleus | 23.63 | 9.0 |
| KRH25675 | Soybean | nucleus | 23.63 | 8.98 |
| Bra004691.1-P | Field mustard | nucleus | 23.63 | 8.94 |
| CDY47967 | Canola | nucleus | 23.63 | 8.88 |
| CDY14829 | Canola | nucleus | 23.63 | 8.85 |
| Bra016879.1-P | Field mustard | nucleus | 23.08 | 8.68 |
| AT2G42400.1 | Thale cress | nucleus | 21.43 | 8.67 |
| PGSC0003DMT400058735 | Potato | cytosol | 13.19 | 7.25 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G057220.1 | EnsemblPlantsGene:HORVU4Hr1G057220 | GO:GO:0000003 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0048578 | PANTHER:PTHR33873 | PANTHER:PTHR33873:SF3 | SEG:seg | UniParc:UPI000B46910A | UniProt:A0A287P6X7 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:480958176..480959090
Molecular Weight (calculated)
19540.2 Da
IEP (calculated)
12.076
GRAVY (calculated)
-0.979
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDLIGGGG GGSAAGKGPR SSTRHQQFCD RAKTRVDDLQ EIFFGLESAR KESRSADAAV LEEQVQRRLP RILPTGGPTN PSLPSPCRNR TTSAALISTD
101: GGRSDRRRRR WLRGGQGSPL VDAPPEVSRP CQDPRGRPPG DLLRPPVRPQ GEPLRRRRRP RGAGPASPSP ASLPTGRPHK PC
101: GGRSDRRRRR WLRGGQGSPL VDAPPEVSRP CQDPRGRPPG DLLRPPVRPQ GEPLRRRRRP RGAGPASPSP ASLPTGRPHK PC
001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQLCD EEDDATSKLA APKPEPADQN
101: LEAGKAAVFQ RGYNLVQGKS EHGLPLVDNC KDLSLAAGNN FDGTAPLEYH QQYDLQQEFE PNFNGGFNNC PSYGVVEGPI HISNFIPTIC PPPSAFLGPK
201: CALWDCPRPA QGFDWFQDYC SSFHAALAFN EGPPGMNPVV RPGGIGLKDG LLFAALSAKA GGKDVGIPEC EGAATAKSPW NAPELFDLTV LESETLREWL
301: FFDKPRRAFE SGNRKQRSLP DYNGRGWHES RKQIMVEFGG LKRSYYMDPQ PLHHFEWHLY EYEINKCDAC ALYRLELKLV DGKKTSKGKV SNDSVADLQK
401: QMGRLTAEFP PENNTTNTTN NNKRCIKGRP KVSTKVATGN VQNTVEQAND YGVGEEFNYL VGNLSDYYIP
101: LEAGKAAVFQ RGYNLVQGKS EHGLPLVDNC KDLSLAAGNN FDGTAPLEYH QQYDLQQEFE PNFNGGFNNC PSYGVVEGPI HISNFIPTIC PPPSAFLGPK
201: CALWDCPRPA QGFDWFQDYC SSFHAALAFN EGPPGMNPVV RPGGIGLKDG LLFAALSAKA GGKDVGIPEC EGAATAKSPW NAPELFDLTV LESETLREWL
301: FFDKPRRAFE SGNRKQRSLP DYNGRGWHES RKQIMVEFGG LKRSYYMDPQ PLHHFEWHLY EYEINKCDAC ALYRLELKLV DGKKTSKGKV SNDSVADLQK
401: QMGRLTAEFP PENNTTNTTN NNKRCIKGRP KVSTKVATGN VQNTVEQAND YGVGEEFNYL VGNLSDYYIP
Arabidopsis Description
VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.