Factsheet for TraesCS1B01G349200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G122500.2
TraesCS4B01G182400.1
TraesCS4D01G183400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	TraesCS4A01G122500.2	AT2G18790.1	22904146
AT2G42400.1	TraesCS4B01G182400.1	AT2G18790.1	22904146
AT2G42400.1	TraesCS4D01G183400.1	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G338300.2	Wheat	nucleus	87.37	87.82
TraesCS1A01G335900.1	Wheat	nucleus	75.43	81.25
HORVU3Hr1G023830.1	Barley	cytosol, plastid	8.7	80.95
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	9.9	70.73
Zm00001d022145_P001	Maize	cytosol	12.63	70.48
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	9.39	68.75
HORVU7Hr1G111470.1	Barley	nucleus	9.04	67.09
EES18506	Sorghum	nucleus, plastid	66.55	64.04
Os05t0515700-01	Rice	nucleus	69.11	63.18
Zm00001d038704_P002	Maize	plastid	64.51	62.58
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	10.92	58.72
HORVU6Hr1G038800.6	Barley	nucleus	10.07	57.84
TraesCS3B01G326500.4	Wheat	mitochondrion	56.66	57.64
KRH50133	Soybean	cytosol, nucleus, plastid	42.15	51.78
KRH20362	Soybean	cytosol, nucleus, plastid	42.15	51.67
KRH30880	Soybean	cytosol	40.1	51.2
KRH32695	Soybean	cytosol	40.44	50.97
PGSC0003DMT400081241	Potato	cytosol	40.27	50.54
PGSC0003DMT400058735	Potato	cytosol	28.5	50.45
VIT_10s0003g00500.t01	Wine grape	nucleus	41.47	50.1
GSMUA_Achr1P27380_001	Banana	cytosol	24.06	50.0
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	39.59	49.68
CDX90157	Canola	nucleus	38.57	49.45
Bra010864.1-P	Field mustard	nucleus	38.57	49.34
CDY35753	Canola	nucleus	38.23	48.91
CDY34095	Canola	nucleus	39.42	48.63
CDY30817	Canola	nucleus	39.93	48.45
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	39.42	48.43
HORVU6Hr1G038750.11	Barley	nucleus	15.02	48.35
AT1G28520.2	Thale cress	nucleus	39.93	48.15
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	42.66	47.26
HORVU4Hr1G057220.1	Barley	nucleus	14.16	45.6
GSMUA_Achr4P15020_001	Banana	nucleus	45.9	43.32
AT2G42400.1	Thale cress	nucleus	33.11	43.11
KRH55846	Soybean	nucleus	34.64	42.47
KRH25675	Soybean	nucleus	34.47	42.17
CDY64518	Canola	nucleus	32.94	41.15
CDX79871	Canola	nucleus	33.11	41.01
Bra016879.1-P	Field mustard	nucleus	33.62	40.7
Bra032913.1-P	Field mustard	mitochondrion, plastid	39.42	40.67
CDY47967	Canola	nucleus	33.45	40.5
CDY14829	Canola	nucleus	33.45	40.33
Bra004691.1-P	Field mustard	nucleus	32.94	40.12
GSMUA_Achr6P22210_001	Banana	nucleus	36.18	39.48
HORVU2Hr1G109410.1	Barley	mitochondrion	12.12	39.44

Protein Annotations

EnsemblPlants:TraesCS1B01G349200.1

EnsemblPlantsGene:TraesCS1B01G349200

PANTHER:PTHR33873

PANTHER:PTHR33873:SF3

SEG:seg

MapMan:15.5.36

Description

No Description!

Coordinates

chr1B:+:579782378..579785528

Molecular Weight (calculated)

63962.7 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.739

Length

586 amino acids

Sequence
(BLAST)

001: MAGDPTGGGG GSATGKGPRS STRHQQFRDR AKTRVDDLQE IFSGLQSARK ESRSADAAVL EEQVHQMLRE WRAELSVASP ASSLQNSLGN NQGAADPPSE
101: TLRLLQLAIE EEDDATSKLA QPMQPSRQDD HQSLNPGLQV HGGTVDGGAN ASQQSLGHGM QGDCGGEVAD VANALFSDQM YYIDHELSID DFLHGSNPDG
201: LNNQPEHQQF NLPLDLQHSN SSYADANNSV QSTGDVFFHM SDLLTTVSPS PSQYLGPKCA LWDCGRPVRG SEECQDYCNP YHAGLALNDD GLLGTMGTRP
301: VMRPRGIDLK DGPLFDALCA KVQGKNVGIP VCVGAATSKS PWNAHELFDL SLLEGESLRE WLFFDRPRRA FESGNRKQRS LPDYNGRGWH ESRKQVMKDF
401: GGLKKSYYMD PQPSSNYEWH LFEYEINDSN TLALYRLEFK ASDPKRSVKS KLGSSSLNEI QQQMVKLSAN SPVDNKRGAR SKTKATQKDT NANTYPALKT
501: TNQAGASNAY EAVPLNIIPN QASASNAYQA VAPSIPNQDS TSNAYEDASQ VDPMSYLNEN VVYGPHLPYG YPDGKGDFYW NPSGGT

Best Arabidopsis Sequence Match ( AT1G28520.1 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.