CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75900
CDX82382
CDX92112
CDX95888

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	CDX75900	AT2G18790.1	22904146
AT2G42400.1	CDX82382	AT2G18790.1	22904146
AT2G42400.1	CDX92112	AT2G18790.1	22904146
AT2G42400.1	CDX95888	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14829	Canola	nucleus	94.42	94.03
Bra016879.1-P	Field mustard	nucleus	90.5	90.5
CDY64518	Canola	nucleus	80.17	82.73
CDX79871	Canola	nucleus	79.34	81.18
AT2G42400.1	Thale cress	nucleus	69.21	74.44
Zm00001d022145_P001	Maize	cytosol	11.36	52.38
CDX90157	Canola	nucleus	44.42	47.05
CDY35753	Canola	nucleus	44.42	46.94
CDY34095	Canola	nucleus	45.45	46.32
CDY30817	Canola	nucleus	45.45	45.55
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	48.35	44.23
KRH25675	Soybean	nucleus	43.18	43.63
KRH55846	Soybean	nucleus	42.98	43.51
Zm00001d041158_P001	Maize	cytosol	27.27	42.72
GSMUA_Achr1P27380_001	Banana	cytosol	23.76	40.78
GSMUA_Achr7P10980_001	Banana	mitochondrion, nucleus	41.74	39.84
Zm00001d045641_P001	Maize	cytosol	31.41	39.28
Zm00001d043500_P006	Maize	mitochondrion	42.36	37.34
Os01t0753000-01	Rice	cytosol	40.08	36.33
TraesCS3D01G291600.1	Wheat	mitochondrion	40.7	36.15
TraesCS1A01G335900.1	Wheat	nucleus	39.88	35.48
TraesCS3B01G326500.4	Wheat	mitochondrion	40.29	33.85
GSMUA_Achr4P15020_001	Banana	nucleus	43.18	33.66
TraesCS1D01G338300.2	Wheat	nucleus	40.5	33.62
TraesCS1B01G349200.1	Wheat	nucleus	40.5	33.45
HORVU1Hr1G076620.2	Barley	nucleus	40.29	33.16
KXG33380	Sorghum	mitochondrion	43.39	32.81
EES18506	Sorghum	nucleus, plastid	39.67	31.53
Zm00001d038704_P002	Maize	plastid	39.05	31.29
Os05t0515700-01	Rice	nucleus	41.12	31.05
TraesCS3A01G291900.1	Wheat	nucleus	40.7	30.83
GSMUA_Achr6P22210_001	Banana	nucleus	33.88	30.54
HORVU3Hr1G072260.1	Barley	plastid	40.91	30.14
Zm00001d012734_P002	Maize	cytosol	40.29	29.86
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	4.96	29.27
HORVU3Hr1G023830.1	Barley	cytosol, plastid	3.72	28.57
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	6.4	28.44
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	4.55	27.5
GSMUA_Achr10P...	Banana	plasma membrane	42.98	27.08
HORVU7Hr1G111470.1	Barley	nucleus	4.34	26.58
HORVU2Hr1G109410.1	Barley	mitochondrion	9.71	26.11
HORVU6Hr1G038750.11	Barley	nucleus	9.3	24.73
HORVU6Hr1G038800.6	Barley	nucleus	5.17	24.51
HORVU4Hr1G057220.1	Barley	nucleus	8.88	23.63

Protein Annotations

EnsemblPlants:CDY47967	EnsemblPlantsGene:GSBRNA2T00088592001	GO:GO:0000003	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0048578	ncoils:Coil	PANTHER:PTHR33873	PANTHER:PTHR33873:SF4	ProteinID:CDY47967	ProteinID:CDY47967.1
UniParc:UPI0004EF4C7A	UniProt:A0A078ICY9	MapMan:15.5.36	:	:	:

Description

BnaA04g24450DBnaA04g24450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICY9]

Coordinates

chrLK032747:-:26275..28491

Molecular Weight (calculated)

54409.6 Da

IEP (calculated)

5.347

GRAVY (calculated)

-0.695

Length

484 amino acids

Sequence
(BLAST)

001: MSNHQKITCV SSSHQNLVEK LMQLQERFSH LQAARKEGRV NDHAVLEAQI SQNLCEWQAE LTAPSPECSL LGGSISHFSE EIARLLKLND EEDDATSSLK
101: EHDAPKPDGF DQSLCPPPEH LEWIDEPFCQ SPFNVNFSCG FEEAVNNNTQ PHDQQLHFAF QEFDPIINTA PDFHVQSNLD IASQLDYHLS EVRQEFNSSP
201: SVKLDASENY TDFTTPQSVR VPPPPSAFLG PKCALWDCTR PAHGSDWYLD YCSDYHGNLA LNEDSPGTAP VLRPGGISLK DNLLIDALRA KTLGKNVGIP
301: VCEGAVNTKC PWNAAELFHL ELVEGETIRE WLFFDKPRRA YDSGNRKQRS LPDYSGRGWH ESRKQLMKEQ EGQKRSYYMD PQPPGLFEWH LFEYQINESD
401: VCALYRLELK LTNGKKCPKG RVAKDPLADL QKKMEKMGQL TPEVASDKPS PPTKVRTKSS KGVKVATQDT PVPATVANEP SSHQ

Best Arabidopsis Sequence Match ( AT2G42400.1 )
(BLAST)

001: MSNHPKITSA HQNVEEKLRE LQERFCHLQA ARKEGRHGDL ALLEAQISQN IREWQAELTA PSPESSLLGE GISQFLEEFA PLLKLDEEDD ATSTLKEHAG
101: AKPDPEGFSQ SLCPPEWTSE NFSQSPFNGN FSCGFEDALN STETHGQQLH YGYEGFDPSI NSAPDFHDQK LSSNLDITSQ YDYIFSEVRQ ELDNSPSTKL
201: DSSEEIDNFA EFSTPSSVRV PPSAFLGPKC ALWDCTRPAQ GSEWYLDYCS NYHGTLALNE DSPGTAPVLR PGGISLKDNL LIDALRAKTQ GKNVGIPVCE
301: GAVNTKCPWN AAELFHLELV EGETIREWLF FDKPRRAYDS GNRKQRSLPD YSGRGWHESR KQLMKEQEGQ KRSYYMDPQP PGPFEWHLFE YQINESDACA
401: LYRLELKVGN GKKSPKGKIS KDPLADLQKK MGQFKVASDK PSPPTKGRKE

Arabidopsis Description

VOZ2VOZ2 [Source:UniProtKB/TrEMBL;Acc:A0A178VSV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.