Factsheet for GSMUA_Achr7P10980_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P08340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	GSMUA_Achr3P08340_001	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g00500.t01	Wine grape	nucleus	56.61	59.18
PGSC0003DMT400058735	Potato	cytosol	38.46	58.91
KRH20362	Soybean	cytosol, nucleus, plastid	55.23	58.58
KRH50133	Soybean	cytosol, nucleus, plastid	54.64	58.07
CDY34095	Canola	nucleus	53.65	57.26
Bra010864.1-P	Field mustard	nucleus	51.48	56.99
CDX90157	Canola	nucleus	51.28	56.89
KRH32695	Soybean	cytosol	52.07	56.77
KRH30880	Soybean	cytosol	51.28	56.64
CDY35753	Canola	nucleus	51.08	56.55
CDY30817	Canola	nucleus	53.85	56.52
AT1G28520.2	Thale cress	nucleus	53.85	56.17
PGSC0003DMT400081241	Potato	cytosol	51.08	55.46
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	51.08	54.3
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	49.9	54.18
GSMUA_Achr1P27380_001	Banana	cytosol	29.59	53.19
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	55.23	52.93
GSMUA_Achr10P...	Banana	plasma membrane	73.37	48.44
Bra032913.1-P	Field mustard	mitochondrion, plastid	54.04	48.24
KRH55846	Soybean	nucleus	44.97	47.7
KRH25675	Soybean	nucleus	44.58	47.18
AT2G42400.1	Thale cress	nucleus	39.65	44.67
GSMUA_Achr4P15020_001	Banana	nucleus	54.24	44.28
CDY64518	Canola	nucleus	40.24	43.5
CDX79871	Canola	nucleus	40.04	42.92
Bra004691.1-P	Field mustard	nucleus	40.24	42.41
CDY14829	Canola	nucleus	40.24	41.98
Bra016879.1-P	Field mustard	nucleus	40.04	41.94
CDY47967	Canola	nucleus	39.84	41.74
GSMUA_Achr6P22210_001	Banana	nucleus	42.41	40.04

Protein Annotations

EnsemblPlants:GSMUA_Achr7P10980_001	EnsemblPlants:GSMUA_Achr7T10980_001	EnsemblPlantsGene:GSMUA_Achr7G10980_001	GO:GO:0000003	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009987	GO:GO:0048578	ncoils:Coil	PANTHER:PTHR33873	PANTHER:PTHR33873:SF1	SEG:seg
UniParc:UPI000294F55E	UniProt:M0TGI6	MapMan:15.5.36	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G10980_001]

Coordinates

chr7:-:8820677..8822798

Molecular Weight (calculated)

56421.5 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.578

Length

507 amino acids

Sequence
(BLAST)

001: MRKRSGGGGG AALHHNHHRR AMREKAKNQV DDLQAMFVGL QSARREGRAA DAAVLEEQLH QLLREWKTEL SEPSPAASAC SSFLKGHSRG PSDLSSYIRR
101: MLQLNEEEED DDATSKLTVL PPKDEPLEVL GPYPVGLQSG AAAAFLREEY LMAQEMPGYG FVAAQQYKCG STGAQHAALQ CLEGADDLQI QHYNLHQQLP
201: QNVLFGFTAA GFDAGDLAPP FCEFVAATCP PPSAFLRPKC ALWDCPRPAR GSEWFQDYCS SFHATLALNE GPPGTSPVLR PGGIDLKDGP LFAALVAKSQ
301: GKNVGIPECE GAATNRSPWN APELFDLLVL NGESLREWLF FDKPRRAFES GNRKQRSLPD YNGRGWHESR KQVMKEFGGL KRSYYMDPQP LSHFEWHLYE
401: YEINDCDACA LYRLELKLVD PKKSAKAKVT IDSMVDLQQQ MGRLNAENKA MESKRYAKGR PRFHYKDSAE AMYSASDFIG RMEDGQSLHS SLEQEAVADK
501: LHGYFGT

Best Arabidopsis Sequence Match ( AT1G28520.5 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.