CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75900
CDX82382
CDX92112
CDX95888

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	CDX75900	AT2G18790.1	22904146
AT2G42400.1	CDX82382	AT2G18790.1	22904146
AT2G42400.1	CDX92112	AT2G18790.1	22904146
AT2G42400.1	CDX95888	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004691.1-P	Field mustard	nucleus	98.94	97.3
CDY64518	Canola	nucleus	92.6	93.39
CDY14829	Canola	nucleus	81.61	79.42
CDY47967	Canola	nucleus	81.18	79.34
AT2G42400.1	Thale cress	nucleus	72.09	75.78
Zm00001d022145_P001	Maize	cytosol	11.63	52.38
CDY34095	Canola	nucleus	47.36	47.16
CDX90157	Canola	nucleus	45.45	47.05
CDY35753	Canola	nucleus	45.45	46.94
CDY30817	Canola	nucleus	47.15	46.17
KRH25675	Soybean	nucleus	44.82	44.26
KRH55846	Soybean	nucleus	44.4	43.93
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	49.05	43.86
Zm00001d041158_P001	Maize	cytosol	27.27	41.75
GSMUA_Achr7P10980_001	Banana	mitochondrion, nucleus	42.92	40.04
GSMUA_Achr1P27380_001	Banana	cytosol	23.68	39.72
Zm00001d045641_P001	Maize	cytosol	31.92	39.02
Zm00001d043500_P006	Maize	mitochondrion	43.97	37.89
Os01t0753000-01	Rice	cytosol	41.44	36.7
TraesCS3D01G291600.1	Wheat	mitochondrion	41.01	35.6
TraesCS1A01G335900.1	Wheat	nucleus	40.59	35.29
GSMUA_Achr4P15020_001	Banana	nucleus	45.24	34.46
TraesCS3B01G326500.4	Wheat	mitochondrion	40.8	33.51
TraesCS1D01G338300.2	Wheat	nucleus	41.23	33.45
HORVU1Hr1G076620.2	Barley	nucleus	41.23	33.16
TraesCS1B01G349200.1	Wheat	nucleus	41.01	33.11
EES18506	Sorghum	nucleus, plastid	41.65	32.35
KXG33380	Sorghum	mitochondrion	43.76	32.34
Os05t0515700-01	Rice	nucleus	42.71	31.51
Zm00001d038704_P002	Maize	plastid	39.96	31.29
TraesCS3A01G291900.1	Wheat	nucleus	41.23	30.52
HORVU3Hr1G072260.1	Barley	plastid	42.28	30.44
Zm00001d012734_P002	Maize	cytosol	41.44	30.02
GSMUA_Achr6P22210_001	Banana	nucleus	33.83	29.8
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	5.07	29.27
HORVU3Hr1G023830.1	Barley	cytosol, plastid	3.81	28.57
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	6.55	28.44
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	4.65	27.5
GSMUA_Achr10P...	Banana	plasma membrane	44.19	27.21
HORVU7Hr1G111470.1	Barley	nucleus	4.44	26.58
HORVU6Hr1G038750.11	Barley	nucleus	9.73	25.27
HORVU6Hr1G038800.6	Barley	nucleus	5.29	24.51
HORVU2Hr1G109410.1	Barley	mitochondrion	9.3	24.44
HORVU4Hr1G057220.1	Barley	nucleus	9.09	23.63

Protein Annotations

EnsemblPlants:CDX79871	EnsemblPlantsGene:GSBRNA2T00132722001	ncoils:Coil	PANTHER:PTHR33873	PANTHER:PTHR33873:SF4	ProteinID:CDX79871
ProteinID:CDX79871.1	SEG:seg	UniParc:UPI0004EEF62E	MapMan:15.5.36	:	:

Description

BnaA05g02850D

Coordinates

chrLK031819:+:644233..646747

Molecular Weight (calculated)

52622.4 Da

IEP (calculated)

5.608

GRAVY (calculated)

-0.698

Length

473 amino acids

Sequence
(BLAST)

001: MSNHPKITCV SSSHQNLVEK LMQLQERFSH LQAARKEGRV NDHAVLEAQI SQNLREWQAE LSAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSSFK
101: EHTVPKADAF DQGLCSPGQL EWAAEPFDQS SFDVNFLSGF EDAVNNSGTH DQQLHCAFQE FDPSLSTAPD FHGQKLSHLD ITSQLDYHLS EVRQEFNNGT
201: PSVKLDVPDE SEFTTPPSVR VPPSAFLGPK CALWDCTRPA HGSDWYMDYC SDYHGNLALT EDSPGTAPVL RPGGISLKDN LLIDALRAKT LGKNVGIPVC
301: EGAVNTKCPW NAAELFHLEL VEGETIREWL FFDKPRRAYD SGNRKQRSLP DYSGRGWHES RKQLMKEQEG QKRSYYMDPQ PPGPFEWHLF EYQINESDAC
401: ALYRLELKLT NGKKSPKGKV AKDPLADLEK KMEKMGKLTP EAASDKPSPT TKSRAKATKG AKAAATGNLT QAT

Best Arabidopsis Sequence Match ( AT2G42400.1 )
(BLAST)

001: MSNHPKITSA HQNVEEKLRE LQERFCHLQA ARKEGRHGDL ALLEAQISQN IREWQAELTA PSPESSLLGE GISQFLEEFA PLLKLDEEDD ATSTLKEHAG
101: AKPDPEGFSQ SLCPPEWTSE NFSQSPFNGN FSCGFEDALN STETHGQQLH YGYEGFDPSI NSAPDFHDQK LSSNLDITSQ YDYIFSEVRQ ELDNSPSTKL
201: DSSEEIDNFA EFSTPSSVRV PPSAFLGPKC ALWDCTRPAQ GSEWYLDYCS NYHGTLALNE DSPGTAPVLR PGGISLKDNL LIDALRAKTQ GKNVGIPVCE
301: GAVNTKCPWN AAELFHLELV EGETIREWLF FDKPRRAYDS GNRKQRSLPD YSGRGWHESR KQLMKEQEGQ KRSYYMDPQP PGPFEWHLFE YQINESDACA
401: LYRLELKVGN GKKSPKGKIS KDPLADLQKK MGQFKVASDK PSPPTKGRKE

Arabidopsis Description

VOZ2VOZ2 [Source:UniProtKB/TrEMBL;Acc:A0A178VSV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.